Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N08
(663 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 199 7e-51
sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subuni... 197 2e-50
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 193 3e-49
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 193 4e-49
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 191 1e-48
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 191 1e-48
sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2 177 2e-44
sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1 173 3e-43
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 171 2e-42
sp|O22469|MSI3_ARATH WD-40 repeat protein MSI3 168 1e-41
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 199 bits (505), Expect = 7e-51
Identities = 101/208 (48%), Positives = 130/208 (62%), Gaps = 4/208 (1%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D T+ WD+N N+N L + + GHE VEDV WH D +FGSVG DK L IW
Sbjct: 162 DQTVCHWDINA---NQNVAGELQAKDVFKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIW 218
Query: 190 DRREPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKGHEG 369
D R P + AHSA+V L FNP+SE ILATGS DK++ LWDLR++ L + H
Sbjct: 219 DVRTSTPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRD 278
Query: 370 SVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCCRIL 537
+ Q+QWS H ET+LAS+ +DKR+H+WDL K Q E + EL FIH GH +I
Sbjct: 279 EIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKIS 338
Query: 538 DIAWNGNEPLMLASVSYDNILQLWQPSE 621
D +WN NEP ++ SVS DNILQ+WQ ++
Sbjct: 339 DFSWNPNEPWVVCSVSEDNILQVWQMAD 366
Score = 61.6 bits (148), Expect = 2e-09
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Frame = +1
Query: 208 PAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYL------KGHEG 369
P I++ H+ + L +NP E ++ + SDD+++ WD+ N L KGHE
Sbjct: 132 PLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKGHES 191
Query: 370 SVGQLQWSLHRETVLASASSDKRIHLWDLK-KTSGSQEGEYSSELSFIHVGHCCRILDIA 546
V + W + + V S DK++ +WD++ T G +S+E++ +A
Sbjct: 192 VVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTSTPGHCIDAHSAEVNC-----------LA 240
Query: 547 WNGNEPLMLASVSYDNILQLWQPSEF*LEFH 639
+N +LA+ S D + LW ++ H
Sbjct: 241 FNPYSEFILATGSADKTVALWDLRNLRMKLH 271
Score = 48.9 bits (115), Expect = 1e-05
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Frame = +1
Query: 205 KPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWD-LRHMG-------NCLKYLKG 360
+P I++ H +V + P +I+AT S + ++D L+H N L LKG
Sbjct: 80 EPDIRIN-HEGEVNRARYMPQKSNIIATKSPHADVYIFDYLKHSAVPRDNTFNPLIRLKG 138
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCRILD 540
H L W+ ++E ++ SAS D+ + WD+ + +Q + + GH + D
Sbjct: 139 HTKEGYGLSWNPNKEGLILSASDDQTVCHWDI---NANQNVAGELQAKDVFKGHESVVED 195
Query: 541 IAWNGNEPLMLASVSYDNILQLW 609
+AW+ + SV D L +W
Sbjct: 196 VAWHVLHDGVFGSVGDDKKLLIW 218
>sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subunit (CAF-1 P55 subunit)
(dCAF-1) (Nucleosome remodeling factor 55 kDa subunit)
(NURF-55)
Length = 430
Score = 197 bits (501), Expect = 2e-50
Identities = 99/211 (46%), Positives = 135/211 (63%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D TI LWD+N TP+ +V+++ + GH VEDV WH + +FGSV D+ L IW
Sbjct: 203 DHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259
Query: 190 DRRE---PKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R KP+ V AH+A+V L FNP+SE ILATGS DK++ LWDLR++ L +
Sbjct: 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ + Q+QWS H ET+LAS+ +D+R+H+WDL K Q E + EL FIH GH
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN NEP ++ SVS DNI+Q+WQ +E
Sbjct: 380 KISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
Score = 57.8 bits (138), Expect = 3e-08
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Frame = +1
Query: 199 EPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDL------RHMGNCLKYLKG 360
E +P +++ H + L +NP L + SDD +I LWD+ + + G
Sbjct: 170 ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCRILD 540
H V + W L E++ S + D+++ +WD + + +S+ S H +
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-------TSKPSHTVDAHTAEVNC 282
Query: 541 IAWNGNEPLMLASVSYDNILQLWQPSEF*LEFH 639
+++N +LA+ S D + LW L+ H
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 193 bits (491), Expect = 3e-49
Identities = 98/211 (46%), Positives = 136/211 (64%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D TI LWD++ P+ + KV+++ T + GH VEDV WH + +FGSV D+ L IW
Sbjct: 199 DHTICLWDISAVPK---EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW 255
Query: 190 DRRE---PKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R KP+ V AH+A+V L FNP+SE ILATGS DK++ LWDLR++ L +
Sbjct: 256 DTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 315
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ + Q+QWS H ET+LAS+ +D+R+++WDL K Q E + EL FIH GH
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN NEP ++ SVS DNI+Q+WQ +E
Sbjct: 376 KISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Score = 55.8 bits (133), Expect = 1e-07
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Frame = +1
Query: 199 EPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLR------HMGNCLKYLKG 360
E P +++ H + L +NP L + SDD +I LWD+ + + G
Sbjct: 166 ECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG 225
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCRILD 540
H V + W L E++ S + D+++ +WD + + +S+ S H +
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNN-------TSKPSHSVDAHTAEVNC 278
Query: 541 IAWNGNEPLMLASVSYDNILQLWQPSEF*LEFH 639
+++N +LA+ S D + LW L+ H
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 193 bits (490), Expect = 4e-49
Identities = 98/211 (46%), Positives = 135/211 (63%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D TI LWD++ P+ KV+++ T + GH VEDV WH + +FGSV D+ L IW
Sbjct: 199 DHTICLWDISAVPKKG---KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW 255
Query: 190 DRRE---PKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R KP+ V AH+A+V L FNP+SE ILATGS DK++ LWDLR++ L +
Sbjct: 256 DTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 315
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ + Q+QWS H ET+LAS+ +D+R+++WDL K Q E + EL FIH GH
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN NEP ++ SVS DNI+Q+WQ +E
Sbjct: 376 KISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Score = 56.2 bits (134), Expect = 7e-08
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Frame = +1
Query: 199 EPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYL------KG 360
E P +++ H + L +NP L + SDD +I LWD+ + K + G
Sbjct: 166 ECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFTG 225
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCRILD 540
H V + W L E++ S + D+++ +WD + + +S+ S H +
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNN-------TSKPSHSVDAHTAEVNC 278
Query: 541 IAWNGNEPLMLASVSYDNILQLWQPSEF*LEFH 639
+++N +LA+ S D + LW L+ H
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 191 bits (485), Expect = 1e-48
Identities = 95/211 (45%), Positives = 134/211 (63%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D T+ LWD+N P+ + K++++ + GH VEDV WH + +FGSV D+ L IW
Sbjct: 198 DHTVCLWDINAGPK---EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW 254
Query: 190 DRRE---PKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R KP+ V AH+A+V L FNP+SE ILATGS DK++ LWDLR++ L +
Sbjct: 255 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 314
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ + Q+ WS H ET+LAS+ +D+R+++WDL K Q E + EL FIH GH
Sbjct: 315 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 374
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN NEP ++ SVS DNI+Q+WQ +E
Sbjct: 375 KISDFSWNPNEPWVICSVSEDNIMQIWQMAE 405
Score = 55.5 bits (132), Expect = 1e-07
Identities = 43/216 (19%), Positives = 87/216 (40%), Gaps = 16/216 (7%)
Frame = +1
Query: 40 GTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIWDRR------- 198
G+ K +C++ + HEG V + + I + ++ ++D
Sbjct: 108 GSVTGKIECEIK------INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPD 161
Query: 199 ---EPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLR------HMGNCLKY 351
E P +++ H + L +N L + SDD ++ LWD+ + +
Sbjct: 162 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 221
Query: 352 LKGHEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCR 531
GH V + W L E++ S + D+++ +WD + + +S+ S + H
Sbjct: 222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNT-------TSKPSHLVDAHTAE 274
Query: 532 ILDIAWNGNEPLMLASVSYDNILQLWQPSEF*LEFH 639
+ +++N +LA+ S D + LW L+ H
Sbjct: 275 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 310
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 191 bits (485), Expect = 1e-48
Identities = 95/211 (45%), Positives = 134/211 (63%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D T+ LWD+N P+ + K++++ + GH VEDV WH + +FGSV D+ L IW
Sbjct: 198 DHTVCLWDINAGPK---EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW 254
Query: 190 DRRE---PKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R KP+ V AH+A+V L FNP+SE ILATGS DK++ LWDLR++ L +
Sbjct: 255 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 314
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ + Q+ WS H ET+LAS+ +D+R+++WDL K Q E + EL FIH GH
Sbjct: 315 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 374
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN NEP ++ SVS DNI+Q+WQ +E
Sbjct: 375 KISDFSWNPNEPWVICSVSEDNIMQIWQMAE 405
Score = 55.5 bits (132), Expect = 1e-07
Identities = 43/216 (19%), Positives = 87/216 (40%), Gaps = 16/216 (7%)
Frame = +1
Query: 40 GTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIWDRR------- 198
G+ K +C++ + HEG V + + I + ++ ++D
Sbjct: 108 GSVTGKIECEIK------INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPD 161
Query: 199 ---EPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLR------HMGNCLKY 351
E P +++ H + L +N L + SDD ++ LWD+ + +
Sbjct: 162 PSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAI 221
Query: 352 LKGHEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCR 531
GH V + W L E++ S + D+++ +WD + + +S+ S + H
Sbjct: 222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNT-------TSKPSHLVDAHTAE 274
Query: 532 ILDIAWNGNEPLMLASVSYDNILQLWQPSEF*LEFH 639
+ +++N +LA+ S D + LW L+ H
Sbjct: 275 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 310
>sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2
Length = 415
Score = 177 bits (449), Expect = 2e-44
Identities = 93/210 (44%), Positives = 128/210 (60%), Gaps = 6/210 (2%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D I LWDV+ TP++K VLN++ Y GHE ++ DV WH ++ +FGS G D L IW
Sbjct: 190 DQKICLWDVSATPQDK----VLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRLVIW 245
Query: 190 DRREPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKGHEG 369
D R + +V H +V L FNPF+E +LAT S D ++ L+DLR + L + HEG
Sbjct: 246 DTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMSSHEG 305
Query: 370 SVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQ-EGEYSS-----ELSFIHVGHCCR 531
V Q++W + ETVLAS+ D+R+ +WDL + Q E E + EL F H GH +
Sbjct: 306 EVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAK 365
Query: 532 ILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
I D AWN NEP ++ASV+ DN LQ+WQ +E
Sbjct: 366 ISDFAWNKNEPWVIASVAEDNSLQVWQMAE 395
Score = 60.1 bits (144), Expect = 5e-09
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 39/176 (22%)
Frame = +1
Query: 199 EPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLR-----HMGNCLKYLKGH 363
E P +++ H + L ++PF E L +GS D+ I LWD+ + N + +GH
Sbjct: 157 ECDPDLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGH 216
Query: 364 EGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSE----LSF-------- 507
E ++ + W + E + SA D R+ +WD + + + LSF
Sbjct: 217 ESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVL 276
Query: 508 --------------------IHV--GHCCRILDIAWNGNEPLMLASVSYDNILQLW 609
+HV H + + W+ N +LAS D L +W
Sbjct: 277 ATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVW 332
>sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1
Length = 424
Score = 173 bits (439), Expect = 3e-43
Identities = 93/211 (44%), Positives = 127/211 (60%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D I LWD+N TP+NK+ L++ + HEG VEDV WH + +FGSVG D+ L IW
Sbjct: 200 DAQICLWDINATPKNKS----LDAQQIFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255
Query: 190 DRREP---KPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R P KP V AHS +V L FNPF+E ++ATGS DK++ L+DLR + L
Sbjct: 256 DLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFDS 315
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ V Q+ W+ ET+LAS +R+ +WDL + Q E + EL FIH GH
Sbjct: 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTS 375
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN E +++SV+ DNILQ+WQ +E
Sbjct: 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAE 406
Score = 62.8 bits (151), Expect = 8e-10
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Frame = +1
Query: 82 LTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIWD-RREPK---------PAIKVAAH 231
+ Q + H+G V + + I + ++ + ++D + P P +K+ H
Sbjct: 118 IIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGH 177
Query: 232 SADVISLDFNPFSEHILATGSDDKSIGLWDLRHMG-----NCLKYLKGHEGSVGQLQWSL 396
S++ L ++ F + L +GSDD I LWD+ + + K HEG V + W L
Sbjct: 178 SSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHL 237
Query: 397 HRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCRILDIAWNGNEPLMLA 576
E + S D+ + +WDL+ S S+ + V H + +A+N ++A
Sbjct: 238 RHEYLFGSVGDDQYLLIWDLRSPSASKPVQSV-------VAHSMEVNCLAFNPFNEWVVA 290
Query: 577 SVSYDNILQLW 609
+ S D ++L+
Sbjct: 291 TGSTDKTVKLF 301
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 171 bits (433), Expect = 2e-42
Identities = 93/211 (44%), Positives = 127/211 (60%), Gaps = 7/211 (3%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D I LWD+N TP+NK L ++ + HEG VEDV WH + +FGSVG D+ L +W
Sbjct: 200 DSHICLWDINATPKNK----ALEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLHVW 255
Query: 190 DRREP---KPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKG 360
D R P KP V AH ++V L FNPF+E ++ATGS DK++ L+DLR + L L
Sbjct: 256 DLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHTLDC 315
Query: 361 HEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSS----ELSFIHVGHCC 528
H+ V Q+ W+ ET+LAS +R+ +WDL + Q E + EL FIH GH
Sbjct: 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375
Query: 529 RILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
+I D +WN E ++ASV+ DNILQ+WQ +E
Sbjct: 376 KISDFSWNPCEDWVVASVAEDNILQIWQMAE 406
Score = 60.8 bits (146), Expect = 3e-09
Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 15/191 (7%)
Frame = +1
Query: 82 LTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIWD-RREPK---------PAIKVAAH 231
+ Q + H+G V + + I + + + ++D + P P +++ H
Sbjct: 118 IIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGH 177
Query: 232 SADVISLDFNPFSEHILATGSDDKSIGLWDLRHMG-----NCLKYLKGHEGSVGQLQWSL 396
S + L ++ F + L +GSDD I LWD+ ++ K HEG V + W L
Sbjct: 178 STEGYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHL 237
Query: 397 HRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHVGHCCRILDIAWNGNEPLMLA 576
E + S D+ +H+WDL+ S ++ + V H + +A+N ++A
Sbjct: 238 RHEYLFGSVGDDQYLHVWDLRTPSVTKPIQSV-------VAHQSEVNCLAFNPFNEWVVA 290
Query: 577 SVSYDNILQLW 609
+ S D ++L+
Sbjct: 291 TGSTDKTVKLF 301
>sp|O22469|MSI3_ARATH WD-40 repeat protein MSI3
Length = 424
Score = 168 bits (425), Expect = 1e-41
Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 6/210 (2%)
Frame = +1
Query: 10 DGTIQLWDVNGTPENKNDCKVLNSLTQYLGHEGSVEDVCWHKFSDQIFGSVGIDKNLCIW 189
D I LWDV+ T +K VLN + Y GH+ +EDV WH ++ IFGS G D L IW
Sbjct: 191 DQRICLWDVSATATDK----VLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIW 246
Query: 190 DRREPKPAIKVAAHSADVISLDFNPFSEHILATGSDDKSIGLWDLRHMGNCLKYLKGHEG 369
D R + +V H ++ L FNPF+E +LAT S D ++ L+DLR + L L HEG
Sbjct: 247 DLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHVLSKHEG 306
Query: 370 SVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQ-EGEYSS-----ELSFIHVGHCCR 531
V Q++W + ETVLAS+ D+R+ +WD+ + Q E E + EL F H GH +
Sbjct: 307 EVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAK 366
Query: 532 ILDIAWNGNEPLMLASVSYDNILQLWQPSE 621
I D AWN +EP +++SV+ DN LQ+WQ +E
Sbjct: 367 ISDFAWNKDEPWVISSVAEDNSLQVWQMAE 396
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +1
Query: 352 LKGHEGSVGQLQWSLHRETVLASASSDKRIHLWDLKKTSGSQEGEYSSELSFIHV--GHC 525
L GHE L WS +E L S S D+RI LWD+ T+ + L+ +HV GH
Sbjct: 165 LMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSATATDK------VLNPMHVYEGHQ 218
Query: 526 CRILDIAWNGNEPLMLASVSYDNILQLW 609
I D+AW+ + S D L +W
Sbjct: 219 SIIEDVAWHMKNENIFGSAGDDCQLVIW 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,883,144
Number of Sequences: 369166
Number of extensions: 1580123
Number of successful extensions: 6828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5723
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)