Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M23
(647 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07797|FRI3_RANCA Ferritin, lower subunit (Ferritin L) 117 2e-26
sp|Q26061|FRI_PACLE Ferritin 117 3e-26
sp|P42577|FRIS_LYMST Soma ferritin 115 7e-26
sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M) 114 2e-25
sp|P17663|FRIH1_XENLA Ferritin heavy chain 1 113 4e-25
sp|P09528|FRIH_MOUSE Ferritin heavy chain (Ferritin H subunit) 112 8e-25
sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit) 112 1e-24
sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit) 111 1e-24
sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) ... 111 2e-24
sp|Q5R8J7|FRIH_PONPY Ferritin heavy chain (Ferritin H subunit) 111 2e-24
>sp|P07797|FRI3_RANCA Ferritin, lower subunit (Ferritin L)
Length = 173
Score = 117 bits (294), Expect = 2e-26
Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Frame = -1
Query: 599 VRGNVRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEEL 420
+ VRQN + E GLN +N + + Y+Y SMA++F R DV L F KFFR+ ++EE
Sbjct: 1 MESQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEK 60
Query: 419 KHARDMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKT 240
+HA +IEY N+RGG+ + + D W L+A++ A+ +K VN A+++LH
Sbjct: 61 EHAEKLIEYQNQRGGRVFLQSVEKPERD---DWANGLEALQTALKLQKSVNQALLDLHAV 117
Query: 239 AGDLSDPNVQNFLDD-YLMEQVNSIASLQVLISRFEKLKNTE--LAQFLIDQ 93
A D SDP++ +FL+ YL E V +I L I+ +KL ++ +A++L ++
Sbjct: 118 AADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNK 169
>sp|Q26061|FRI_PACLE Ferritin
Length = 181
Score = 117 bits (292), Expect = 3e-26
Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 1/170 (0%)
Frame = -1
Query: 587 VRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHAR 408
+R N + E +N QIN E A Y+Y SM +F R D+ L G KFF+ S+DEE +H +
Sbjct: 5 IRHNYHEDCEP-INKQINLEFYASYVYMSMGHYFDRDDISLPGASKFFKDSSDEEREHGQ 63
Query: 407 DMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDL 228
+++Y NKRG + + + I+ S W DA++ A+ E EVN ++++L TA +
Sbjct: 64 KLMKYQNKRGARIVLQAIAAPSLQ---EWGNLHDALQAALDLENEVNQSLLDLDATASKI 120
Query: 227 SDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLKNTELAQFLIDQELKK 81
+DP++ N L+ ++L EQV SI + LI+R ++ + L +FL D+ELK+
Sbjct: 121 NDPHLTNMLEGEFLEEQVESIEKIGNLITRLKRAGTSGLGEFLFDKELKQ 170
>sp|P42577|FRIS_LYMST Soma ferritin
Length = 174
Score = 115 bits (289), Expect = 7e-26
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = -1
Query: 584 RQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHARD 405
RQN + E G+N QIN EL A Y Y+SMA +F R DV L GF KFF+ ++EE +HA
Sbjct: 7 RQNYHAESEAGINRQINMELYASYSYQSMAYYFDRDDVALPGFHKFFKHQSEEEREHAEK 66
Query: 404 MIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDLS 225
+++Y NKRGG+ + + I D W L+A++ A+ EK VN ++++LHK
Sbjct: 67 LMKYQNKRGGRIVLQDIKKPDRD---EWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHD 123
Query: 224 DPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLKNTELAQFLIDQE 90
D + +FL+ ++L EQV SI L I+ +++ L +++ D+E
Sbjct: 124 DAQMADFLESEFLEEQVKSIKELSDYITNLKRV-GPGLGEYIFDKE 168
>sp|P49947|FRIM_SALSA Ferritin, middle subunit (Ferritin M)
Length = 176
Score = 114 bits (285), Expect = 2e-25
Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Frame = -1
Query: 599 VRGNVRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEEL 420
+ +RQN + E +N IN E+ A Y Y SMA +F R DV L GF FF+++++EE
Sbjct: 1 MESQIRQNYHHDCERAINRMINMEMFASYTYTSMAFYFSRDDVALPGFAHFFKENSEEER 60
Query: 419 KHARDMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKT 240
+HA ++ + NKRGG+ + + I D W L+A++ A+ EK VN A+++LHK
Sbjct: 61 EHADKLLSFQNKRGGRILLQDIKKPERD---EWGNGLEAMQCALQLEKNVNQALLDLHKI 117
Query: 239 AGDLSDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLK--NTELAQFLIDQ 93
A D DP++ +FL+ YL EQV +I L I+ K+ ++A++L D+
Sbjct: 118 ASDKVDPHLCDFLETHYLNEQVEAIKKLGDHITNLTKMDAVKNKMAEYLFDK 169
>sp|P17663|FRIH1_XENLA Ferritin heavy chain 1
Length = 176
Score = 113 bits (283), Expect = 4e-25
Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
Frame = -1
Query: 599 VRGNVRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEEL 420
++ VRQN N E +N +N E+ A Y+Y SM+ +F R DV L KFF++ + EE
Sbjct: 1 MQSQVRQNFNSDCEAAINRMVNLEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEER 60
Query: 419 KHARDMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKT 240
+HA ++Y NKRGG+ + + I D W L+A++ A+ EK VN A+++LHK
Sbjct: 61 EHAEKFLKYQNKRGGRVVLQDIKKPERD---EWSNTLEAMQAALQLEKTVNQALLDLHKL 117
Query: 239 AGDLSDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKL--KNTELAQFLIDQ 93
A D DP + +FL+ +YL EQV ++ L I+ ++L + ++L D+
Sbjct: 118 ASDKVDPQLCDFLESEYLEEQVKAMKELGDYITNLKRLGVPQNGMGEYLFDK 169
>sp|P09528|FRIH_MOUSE Ferritin heavy chain (Ferritin H subunit)
Length = 182
Score = 112 bits (280), Expect = 8e-25
Identities = 64/168 (38%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Frame = -1
Query: 587 VRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHAR 408
VRQN + E +N QIN EL A Y+Y SM+ +F R DV L+ F K+F + EE +HA
Sbjct: 9 VRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAE 68
Query: 407 DMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDL 228
+++ N+RGG+ + I D W+ L+A++ A+ EK VN +++ELHK A D
Sbjct: 69 KLMKLQNQRGGRIFLQDIKKPDRD---DWESGLNAMECALHLEKSVNQSLLELHKLATDK 125
Query: 227 SDPNVQNFLDD-YLMEQVNSIASLQVLISRFEKLKNTE--LAQFLIDQ 93
+DP++ +F++ YL EQV SI L ++ K+ E +A++L D+
Sbjct: 126 NDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDK 173
>sp|P19132|FRIH_RAT Ferritin heavy chain (Ferritin H subunit)
Length = 182
Score = 112 bits (279), Expect = 1e-24
Identities = 64/168 (38%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Frame = -1
Query: 587 VRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHAR 408
VRQN + E +N QIN EL A Y+Y SM+ +F R DV L+ F K+F + EE +HA
Sbjct: 9 VRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAE 68
Query: 407 DMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDL 228
+++ N+RGG+ + I D W+ L+A++ A+ EK VN +++ELHK A D
Sbjct: 69 KLMKLQNQRGGRIFLQDIKKPDRD---DWESGLNAMRCALHLEKSVNQSLLELHKLATDK 125
Query: 227 SDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLKNTE--LAQFLIDQ 93
+DP++ +F++ YL EQV SI L ++ K+ E +A++L D+
Sbjct: 126 NDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDK 173
>sp|P29389|FRIH_CRIGR Ferritin heavy chain (Ferritin H subunit)
Length = 186
Score = 111 bits (278), Expect = 1e-24
Identities = 64/168 (38%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Frame = -1
Query: 587 VRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHAR 408
VRQN + E +N QIN EL A Y+Y SM+ +F R DV L+ F K+F + EE +HA
Sbjct: 14 VRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAE 73
Query: 407 DMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDL 228
+++ N+RGG+ + I D W+ L+A++ A+ EK VN +++ELHK A D
Sbjct: 74 KLMKLQNQRGGRIFLQDIKKPDRD---DWESGLNAMECALHLEKSVNQSLLELHKLATDK 130
Query: 227 SDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLKNTE--LAQFLIDQ 93
+DP++ +F++ YL EQV SI L ++ K+ E +A++L D+
Sbjct: 131 NDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDK 178
>sp|P07798|FRI2_RANCA Ferritin, middle subunit (Ferritin M) (Ferritin X) (Ferritin H')
Length = 176
Score = 111 bits (277), Expect = 2e-24
Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Frame = -1
Query: 587 VRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHAR 408
VRQN + E +N +N EL A Y Y SM AFF R DV L +FF++ + EE +HA
Sbjct: 5 VRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAE 64
Query: 407 DMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDL 228
++Y NKRGG+ + + I D W L+A++ A+ EK VN A+++LHK A D
Sbjct: 65 KFMKYQNKRGGRVVLQDIKKPERD---EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 227 SDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLKNTE--LAQFLIDQELKK 81
DP++ +FL+ +YL EQV I + I+ ++L E + ++L D+ K
Sbjct: 122 VDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDKHSVK 173
>sp|Q5R8J7|FRIH_PONPY Ferritin heavy chain (Ferritin H subunit)
Length = 183
Score = 111 bits (277), Expect = 2e-24
Identities = 65/168 (38%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Frame = -1
Query: 587 VRQNLNITIEDGLNSQINTELKAFYIYESMAAFFQRPDVGLEGFEKFFRKSADEELKHAR 408
VRQN + E +N QIN EL A Y+Y SM+ +F R DV L+ F K+F + EE +HA
Sbjct: 9 VRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAE 68
Query: 407 DMIEYINKRGGKYIPKPISLSSSDAKITWDGALDAVKDAMIKEKEVNAAIIELHKTAGDL 228
+++ N+RGG+ + I D W+ L+A++ A+ EK VN +++ELHK A D
Sbjct: 69 KLMKLQNQRGGRIFLQDIKKPDCD---DWESGLNAMECALHLEKNVNQSLLELHKLATDK 125
Query: 227 SDPNVQNFLD-DYLMEQVNSIASLQVLISRFEKLKNTE--LAQFLIDQ 93
+DP++ +FL+ YL EQV +I L ++ K+ E LA++L D+
Sbjct: 126 NDPHLCDFLETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDK 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,056,387
Number of Sequences: 369166
Number of extensions: 1282403
Number of successful extensions: 3429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3380
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)