Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M22
(488 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 33 0.27
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 33 0.27
sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine am... 31 1.4
sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein... 31 1.8
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 31 1.8
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3 30 2.3
sp|Q93099|HGD_HUMAN Homogentisate 1,2-dioxygenase (Homogent... 30 2.3
sp|O09173|HGD_MOUSE Homogentisate 1,2-dioxygenase (Homogent... 30 2.3
sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory s... 30 3.0
sp|Q07872|ENT4_YEAST Epsin-4 30 3.0
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 33.5 bits (75), Expect = 0.27
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 102 KETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYK 275
KE +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 166 KENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ 224
Query: 276 VEVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 386
EV V + ++D N+E + D TNDD+
Sbjct: 225 -EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 260
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 33.5 bits (75), Expect = 0.27
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 102 KETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYK 275
KE +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 83 KENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ 141
Query: 276 VEVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 386
EV V + ++D N+E + D TNDD+
Sbjct: 142 -EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 177
>sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine amidase
Length = 233
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 102 KETLDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 248
K LDL FN + + LS+ +Q+++ I ++ I + S+G+LS+I
Sbjct: 133 KTVLDLQFNNFQKMEINLSRYIFQQLKKIIKLDKIN-LNYASLGILSSI 180
>sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)
Length = 1010
Score = 30.8 bits (68), Expect = 1.8
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 23 PELLQQIESVCPSHVNRVLQSHVL 94
PE++QQ+E++C ++ VLQ HV+
Sbjct: 626 PEIIQQLENICLRIIDLVLQKHVI 649
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 3 STVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSKSTYQEIR 182
S ++A +F N L +S++ YN++S NK L K ++S + + + R
Sbjct: 436 SESQEVATSFQNDL-ISIKYCFNNLYNYIS--NKTALS---TKNLFLFSAIKSNATKHKR 489
Query: 183 DQ--ISIENIKWIGQNSIGLLSNIKESLSA 266
Q S+EN +G NS + + K S++A
Sbjct: 490 TQSFFSVENTTTLGNNSNFVKGHFKSSINA 519
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3
Length = 3497
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 174 EIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEEVSQNDEDSTHNEEAN 353
E + + I ++ +S+ + S KE +K K + + P + +VS NDEDS EE
Sbjct: 1787 EYVETVQIVDLSEDSDSSVRVDSQGKEMRRSKSKHSLNETP-LPKVSDNDEDSAEQEEDL 1845
Query: 354 LR 359
LR
Sbjct: 1846 LR 1847
>sp|Q93099|HGD_HUMAN Homogentisate 1,2-dioxygenase (Homogentisicase) (Homogentisate
oxygenase) (Homogentisic acid oxidase)
Length = 445
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 76 ATITCpreTRKRWILCSIKPSISTPPYQN 162
+ TCPR T KR L I PS+S P+++
Sbjct: 47 SAFTCPRSTNKRSWLYRILPSVSHKPFES 75
>sp|O09173|HGD_MOUSE Homogentisate 1,2-dioxygenase (Homogentisicase) (Homogentisate
oxygenase) (Homogentisic acid oxidase)
Length = 445
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 76 ATITCpreTRKRWILCSIKPSISTPPYQN 162
+ TCPR T KR L I PS+S P+++
Sbjct: 47 SAFTCPRNTNKRSWLYRILPSVSHKPFES 75
>sp|P36047|SDS22_YEAST Protein phosphatases PP1 regulatory subunit SDS22
Length = 338
Score = 30.0 bits (66), Expect = 3.0
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 84 HMSSG-NKET----LDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 248
H+SS NK T LDL FNK +HI + + + +EN+ ++ QNSI + N+
Sbjct: 104 HISSNVNKLTKLTSLDLSFNKIKHI---------KNLENLTDLENLYFV-QNSISKIENL 153
Query: 249 KESLSAKYKVEVGQN 293
S K +E+G N
Sbjct: 154 STLKSLK-NLELGGN 167
>sp|Q07872|ENT4_YEAST Epsin-4
Length = 247
Score = 30.0 bits (66), Expect = 3.0
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Frame = +3
Query: 18 LAQNFSNKLRVSVRAMSTVCYNH--MSSGNKETLDLMFNKTEHIYSTLSKSTYQEIRDQI 191
L QN N R ++ M T+ M++G+ E + + I L Q+ RD+
Sbjct: 62 LGQNRRNSHRNCIQVMKTLTLVSYLMNNGSNEFIKWLKGNMILI-EILEDFQVQDPRDER 120
Query: 192 SIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQ-NPSVEEVSQNDEDSTHNEEANLRDYL 368
E+I+ + +N +GLL + + L K + +V Q S+ + D++H + +R L
Sbjct: 121 KAEDIQKLSRNVLGLLQD--DGLLEKQRKDVIQFRSSISTPGRKSTDNSHLKLEEMRSEL 178
Query: 369 S 371
+
Sbjct: 179 T 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,157,330
Number of Sequences: 369166
Number of extensions: 1028048
Number of successful extensions: 3177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3173
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)