Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M18
(664 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1) 33 0.67
sp|Q80T79|CSMD3_MOUSE CUB and sushi multiple domains protein 3 33 0.87
sp|Q7Z407|CSMD3_HUMAN CUB and sushi multiple domains protei... 33 0.87
sp|P24585|DEG1_CAEEL Degenerin deg-1 (Degeneration of certa... 32 1.9
sp|P91685|MGR_DROME Metabotropic glutamate receptor precursor 32 1.9
sp|P56946|CPHB_SYNY8 Cyanophycinase 30 4.3
sp|P17053|G168_PARPR G surface protein, allelic form 168 pr... 29 9.6
sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain containing protein 1 29 9.6
>sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1)
Length = 71
Score = 33.1 bits (74), Expect = 0.67
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 322 CGGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACSCCS 477
CG GCN ++ + GL + T TI ++ + + S HP + C C S
Sbjct: 12 CGSGCNCKNPVLGLSEKTTSKTIVADVAPVKS-HPEGSEMSVEGGHGCKCGS 62
>sp|Q80T79|CSMD3_MOUSE CUB and sushi multiple domains protein 3
Length = 2796
Score = 32.7 bits (73), Expect = 0.87
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Frame = +1
Query: 130 LPACSLEDEALVNNGAKSII---------NDYRCCYTAAIERCKVKNVKVNQITLANGDP 282
LP C E A N ++ N++ C Y+ ++ K N+ LA GD
Sbjct: 393 LPRCVAECGASATNNEGILLSPNYPLNYENNHECIYSLQVQAGKGINISARTFHLAQGDV 452
Query: 283 CKLIDGNFI*KTVCGGGCNARSSIRGLEQITNPLTIFSEYS 405
K+ DG KT G +S+RGL + ++ E++
Sbjct: 453 LKIYDGKD--KTTHLLGAFTGASMRGLTLSSTSNQLWLEFN 491
>sp|Q7Z407|CSMD3_HUMAN CUB and sushi multiple domains protein 3 precursor
Length = 3670
Score = 32.7 bits (73), Expect = 0.87
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Frame = +1
Query: 130 LPACSLEDEALVNNGAKSII---------NDYRCCYTAAIERCKVKNVKVNQITLANGDP 282
LP C E A N ++ N++ C Y+ ++ K N+ LA GD
Sbjct: 1197 LPRCVAECGASATNNEGILLSPNYPLNYENNHECIYSIQVQAGKGINISARTFHLAQGDV 1256
Query: 283 CKLIDGNFI*KTVCGGGCNARSSIRGLEQITNPLTIFSEYS 405
K+ DG KT G +S+RGL + ++ E++
Sbjct: 1257 LKIYDGKD--KTTHLLGAFTGASMRGLTLSSTSNQLWLEFN 1295
>sp|P24585|DEG1_CAEEL Degenerin deg-1 (Degeneration of certain neurons protein 1)
Length = 778
Score = 31.6 bits (70), Expect = 1.9
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 421 HPSRLPVGFMQDSACSCCSPDQYAINRPYRY---------TCTNLNNGNTVSGYMMDIRI 573
H S G + D CSC P ++ + YR+ TC N G+ + + ++
Sbjct: 574 HRSCFQNGLIDD--CSCGDP-RFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKM 630
Query: 574 TKCACKNTCE 603
KC CK +CE
Sbjct: 631 DKCVCKQSCE 640
>sp|P91685|MGR_DROME Metabotropic glutamate receptor precursor
Length = 976
Score = 31.6 bits (70), Expect = 1.9
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +1
Query: 325 GGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACSCCSPDQYAINRP 504
G C + RG++++ L ++N P+ LP + CS D YA+N+
Sbjct: 59 GAPCGPKVYNRGVQRLEAMLYAIDR----VNNDPNILPGITIGVHILDTCSRDTYALNQS 114
Query: 505 YRYTCTNLNNGNTVSGY 555
++ +LNN +T SGY
Sbjct: 115 LQFVRASLNNLDT-SGY 130
>sp|P56946|CPHB_SYNY8 Cyanophycinase
Length = 272
Score = 30.4 bits (67), Expect = 4.3
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Frame = +1
Query: 211 TAAIERCKVKNVKVNQITLANGDPCKLIDGNFI*KTVCGGGCNARSSIRGLEQITNPLTI 390
T +ER + + VK+ ++TL + G+ + GG + S R L + L I
Sbjct: 111 TPLMERIR-QRVKLGEVTLGGTSAGAAVMGHHM----IAGGSSGESPNRALVDMAMGLGI 165
Query: 391 FSEYS---------------KLLSNHPSRLPVGFMQDSACSCCSPDQY 489
E LSNHP RL +G +D+ C+ D+Y
Sbjct: 166 IPEVIVDQHFHNRNRMARLLSALSNHPERLGIGIDEDT-CAVFQKDEY 212
>sp|P17053|G168_PARPR G surface protein, allelic form 168 precursor
Length = 2704
Score = 29.3 bits (64), Expect = 9.6
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Frame = +1
Query: 127 GLPACSLEDEALVNNGAKSIINDYR--CCYTAA--------IERCKVKNVKVNQITLANG 276
G C+L V N ++ R C +TAA +C NQ T NG
Sbjct: 2551 GTGTCALMTACTVANNDQTACQAARDRCSWTAASGTGATAVASKCATHTCATNQAT--NG 2608
Query: 277 DPCKLIDGNFI*KTVC---GGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHPSRLPVGF 447
+ ++ + + VC G C A T+P T+ S L+S +
Sbjct: 2609 ACTRFLNWDKKTQQVCTLVSGACTA----------TDPSTLSSNDCFLVSGYTYTWNAS- 2657
Query: 448 MQDSACSCCSPDQYAINRPYRYTCTNLNNGNTVSGYMMDIRI 573
S C C+ N T T NN T SGY++ + I
Sbjct: 2658 --TSKCGVCTAVVVQPNTTDNNTNTTDNNTTTDSGYILGLSI 2697
>sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain containing protein 1
Length = 893
Score = 29.3 bits (64), Expect = 9.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 370 ITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACSCCSP 480
+ PL++ + + LL H LPVG Q A SC P
Sbjct: 643 LLQPLSVLTFHLDLLFEHHHHLPVGLQQAPAPSCPPP 679
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,738,971
Number of Sequences: 369166
Number of extensions: 1456932
Number of successful extensions: 3392
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3388
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)