Planarian EST Database

Dr_sW_002_M03-1

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_002_M03-1
         (507 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92000|SHH_XENLA  Sonic hedgehog protein precursor (X-SHH...    30   3.2  

>sp|Q92000|SHH_XENLA Sonic hedgehog protein precursor (X-SHH) (VHH-1) [Contains: Sonic
           hedgehog protein N-product; Sonic hedgehog protein
           C-product]
          Length = 444

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 349 LQPLHQVKLNLH*IHQTRRHF---LQLHHHVLHIHWVS 453
           LQP HQV L  H     + H    LQ HH +  IHW S
Sbjct: 381 LQPHHQVDLQSHHQVDLQSHHQVDLQSHHQLEGIHWYS 418

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,349,176
Number of Sequences: 369166
Number of extensions: 307102
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)