Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L23
(508 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F mem... 203 2e-52
sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F mem... 203 2e-52
sp|P40024|YEM6_YEAST Probable ATP-dependent transporter YER... 140 1e-33
sp|P43535|GCN20_YEAST Protein GCN20 126 3e-29
sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F mem... 103 2e-22
sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F mem... 103 2e-22
sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F membe... 103 2e-22
sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F mem... 103 2e-22
sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 103 2e-22
sp|P44808|Y658_HAEIN Probable ABC transporter ATP-binding p... 86 5e-17
>sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 (Iron-inhibited ABC
transporter 2)
Length = 623
Score = 203 bits (517), Expect = 2e-52
Identities = 94/144 (65%), Positives = 118/144 (81%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
LDL+ + LE+MMK +P IKEK+EMRK +GRYGLTG QQ+ PI++LSDGQ+CR+ AWLA
Sbjct: 473 LDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAW 532
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
PHML LDEPTNHLD+ETID+LADAINEFEGG++LVSHDFRLI +VA+EIWVC+ +T
Sbjct: 533 QNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTIT 592
Query: 364 KWPGDIYSYKTSLIKEIEREHTRM 435
KWPGDI +YK L ++ E ++
Sbjct: 593 KWPGDILAYKEHLKSKLVDEEPQL 616
Score = 55.8 bits (133), Expect = 6e-08
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Frame = +1
Query: 28 EWMMKSFPHIKEKD----EMRKK--LGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGC 189
E +M+ + ++E D EMR L G T Q +K S G R R+ A
Sbjct: 187 EKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIR 246
Query: 190 PHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKW 369
P MLLLDEPTNHLDL+ L + + F+ L+LVSH + V I + + +
Sbjct: 247 PFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYY 306
Query: 370 PGDIYSYKTSLIKEIEREHTRMMTER 447
G+ Y + ++ E + R E+
Sbjct: 307 TGNYDQYVKTRLELEENQMKRFHWEQ 332
>sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2
Length = 628
Score = 203 bits (517), Expect = 2e-52
Identities = 94/144 (65%), Positives = 118/144 (81%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
LDL+ + LE+MMK +P IKEK+EMRK +GRYGLTG QQ+ PI++LSDGQ+CR+ AWLA
Sbjct: 478 LDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAW 537
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
PHML LDEPTNHLD+ETID+LADAINEFEGG++LVSHDFRLI +VA+EIWVC+ +T
Sbjct: 538 QNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTIT 597
Query: 364 KWPGDIYSYKTSLIKEIEREHTRM 435
KWPGDI +YK L ++ E ++
Sbjct: 598 KWPGDILAYKEHLKSKLVDEEPQL 621
Score = 55.8 bits (133), Expect = 6e-08
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Frame = +1
Query: 28 EWMMKSFPHIKEKD----EMRKK--LGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGC 189
E +M+ + ++E D EMR L G T Q +K S G R R+ A
Sbjct: 192 EKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIR 251
Query: 190 PHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKW 369
P MLLLDEPTNHLDL+ L + + F+ L+LVSH + V I + + +
Sbjct: 252 PFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYY 311
Query: 370 PGDIYSYKTSLIKEIEREHTRMMTER 447
G+ Y + ++ E + R E+
Sbjct: 312 TGNYDQYVKTRLELEENQMKRFHWEQ 337
>sp|P40024|YEM6_YEAST Probable ATP-dependent transporter YER036C
Length = 610
Score = 140 bits (354), Expect = 1e-33
Identities = 70/138 (50%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEM-RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLA 180
LDL +ALE++ + +I + + R +LGRYGLTG Q + +LS+GQR R++FA LA
Sbjct: 471 LDLTKSALEFVRDKYSNISQDFQFWRGQLGRYGLTGEGQTVQMATLSEGQRSRVVFALLA 530
Query: 181 EGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAV 360
P++LLLDEPTN LD+ TIDSLADAINEF GG+++VSHDFRL+ ++A++I+V ++
Sbjct: 531 LEQPNVLLLDEPTNGLDIPTIDSLADAINEFNGGVVVVSHDFRLLDKIAQDIFVVENKTA 590
Query: 361 TKWPGDIYSYKTSLIKEI 414
T+W G I YK L K +
Sbjct: 591 TRWDGSILQYKNKLAKNV 608
Score = 45.8 bits (107), Expect = 6e-05
Identities = 29/87 (33%), Positives = 43/87 (49%)
Frame = +1
Query: 130 KSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFR 309
K +S G + R+ A P +LLLD+PT HLDLE L + + F+ L+LVSH
Sbjct: 225 KDMSGGWKMRVALAKALFVKPTLLLLDDPTAHLDLEACVWLEEYLKRFDRTLVLVSHSQD 284
Query: 310 LIGRVAEEIWVCDHGAVTKWPGDIYSY 390
+ V + +T + G+ SY
Sbjct: 285 FLNGVCTNMIDMRAQKLTAYGGNYDSY 311
>sp|P43535|GCN20_YEAST Protein GCN20
Length = 752
Score = 126 bits (316), Expect = 3e-29
Identities = 59/138 (42%), Positives = 92/138 (66%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
+DL ++A++WM KSFP K +E R+ LG +G+TG + ++ LS GQ+ R+ FA L
Sbjct: 608 MDLTTSAVDWMSKSFPG-KTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCL 666
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
PH+L+LDEP+NHLD +D+L +A+ F GG+L+VSHD +I V +EIWV + G V
Sbjct: 667 NNPHILVLDEPSNHLDTTGLDALVEALKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVK 726
Query: 364 KWPGDIYSYKTSLIKEIE 417
++ G IY Y+ +++ +
Sbjct: 727 RFEGTIYDYRDYILQSAD 744
Score = 55.5 bits (132), Expect = 7e-08
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 7/154 (4%)
Frame = +1
Query: 7 DLNSTALEWMMKSFPHIKEKDEMRKKLGRYGL---TGGQQICPIKSLSDGQRCRIIFAWL 177
DL++ ++ K +K E R YGL T QQ P S S G R R+ A
Sbjct: 323 DLDNHLIQISDKLVDMESDKAEARAASILYGLGFSTEAQQQ-PTNSFSGGWRMRLSLARA 381
Query: 178 AEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGA 357
P +LLLDEP+N LD+ +I LA+ + + +L VSHD + VA +I +
Sbjct: 382 LFCQPDLLLLDEPSNMLDVPSIAYLAEYLKTYPNTVLTVSHDRAFLNEVATDIIYQHNER 441
Query: 358 VTKWPGD----IYSYKTSLIKEIEREHTRMMTER 447
+ + G Y+ K K +RE+ M R
Sbjct: 442 LDYYRGQDFDTFYTTKEERRKNAQREYDNQMVYR 475
>sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1
Length = 837
Score = 103 bits (258), Expect = 2e-22
Identities = 55/137 (40%), Positives = 88/137 (64%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
L + T E++ +SF ++ +D RK LGR+GL I LS GQ+ R++FA LA
Sbjct: 693 LHMEETPTEYLQRSF-NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 750
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
P +L+LDEPTN+LD+E+ID+L +AIN+++G +++VSHD RLI ++WV + V+
Sbjct: 751 REPDVLILDEPTNNLDIESIDALGEAINDYKGAVIVVSHDARLITETNCQLWVVEEQGVS 810
Query: 364 KWPGDIYSYKTSLIKEI 414
+ GD YK +++ +
Sbjct: 811 QIDGDFDDYKREVLEAL 827
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Frame = +1
Query: 13 NSTALEWMMKSFPHIKE------KDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAW 174
+ TA E + K + ++ + + R+ L G Q P + S G R R+ A
Sbjct: 397 DDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLAR 456
Query: 175 LAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHG 354
P +L+LDEPTNHLDL + L + + + LL+VSHD + V +I D
Sbjct: 457 ALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQ 516
Query: 355 AVTKWPGDIYSYK-------TSLIKEIEREHTRM 435
+ + G+ ++K L+K+ E++ ++
Sbjct: 517 RLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKL 550
>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
(TNF-alpha-stimulated ABC protein)
Length = 845
Score = 103 bits (258), Expect = 2e-22
Identities = 55/137 (40%), Positives = 88/137 (64%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
L + T E++ + F ++ +D RK LGR+GL I LS GQ+ R++FA LA
Sbjct: 701 LRMEETPTEYLQRGF-NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 758
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
P +L+LDEPTN+LD+E+ID+L +AINE++G +++VSHD RLI ++WV + +V+
Sbjct: 759 REPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVS 818
Query: 364 KWPGDIYSYKTSLIKEI 414
+ GD YK +++ +
Sbjct: 819 QIDGDFEDYKREVLEAL 835
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Frame = +1
Query: 13 NSTALEWMMKSFPHIKE------KDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAW 174
+ TA E + K + ++ + + R+ L G Q P + S G R R+ A
Sbjct: 405 DDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLAR 464
Query: 175 LAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHG 354
P +L+LDEPTNHLDL + L + + + LL+VSHD + V +I D
Sbjct: 465 ALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQ 524
Query: 355 AVTKWPGDIYSYK-------TSLIKEIEREHTRM 435
+ + G+ ++K L+K+ E++ ++
Sbjct: 525 RLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKL 558
>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
Length = 839
Score = 103 bits (258), Expect = 2e-22
Identities = 55/137 (40%), Positives = 88/137 (64%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
L + T E++ + F ++ +D RK LGR+GL I LS GQ+ R++FA LA
Sbjct: 695 LHMEETPTEYLQRGF-NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 752
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
P +L+LDEPTN+LD+E+ID+L +AINE++G +++VSHD RLI ++WV + +V+
Sbjct: 753 REPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVS 812
Query: 364 KWPGDIYSYKTSLIKEI 414
+ GD YK +++ +
Sbjct: 813 QIDGDFDDYKREVLEAL 829
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Frame = +1
Query: 13 NSTALEWMMKSFPHIKE------KDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAW 174
+ TA E + K + ++ + + R+ L G Q P + S G R R+ A
Sbjct: 399 DDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLAR 458
Query: 175 LAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHG 354
P +L+LDEPTNHLDL + L + + + LL+VSHD + V +I D
Sbjct: 459 ALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQ 518
Query: 355 AVTKWPGDIYSYK-------TSLIKEIEREHTRM 435
+ + G+ ++K L+K+ E++ ++
Sbjct: 519 RLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKL 552
>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
Length = 807
Score = 103 bits (258), Expect = 2e-22
Identities = 55/137 (40%), Positives = 88/137 (64%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
L + T E++ + F ++ +D RK LGR+GL I LS GQ+ R++FA LA
Sbjct: 663 LRMEETPTEYLQRGF-NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 720
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
P +L+LDEPTN+LD+E+ID+L +AINE++G +++VSHD RLI ++WV + +V+
Sbjct: 721 REPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVS 780
Query: 364 KWPGDIYSYKTSLIKEI 414
+ GD YK +++ +
Sbjct: 781 QIDGDFEDYKREVLEAL 797
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Frame = +1
Query: 13 NSTALEWMMKSFPHIKE------KDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAW 174
+ TA E + K + ++ + + R+ L G Q P + S G R R+ A
Sbjct: 367 DDTAAERLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLAR 426
Query: 175 LAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHG 354
P +L+LDEPTNHLDL + L + + + LL+VSHD + V +I D
Sbjct: 427 ALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQ 486
Query: 355 AVTKWPGDIYSYK-------TSLIKEIEREHTRM 435
+ + G+ ++K L+K+ E++ ++
Sbjct: 487 RLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKL 520
>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1
Length = 807
Score = 103 bits (257), Expect = 2e-22
Identities = 55/137 (40%), Positives = 88/137 (64%)
Frame = +1
Query: 4 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 183
L + T E++ + F ++ +D RK LGR+GL I LS GQ+ R++FA LA
Sbjct: 663 LRMEETPTEYLQRGF-NLPYQDA-RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 720
Query: 184 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 363
P +L+LDEPTN+LD+E+ID+L +AINE++G +++VSHD RLI ++WV + +V+
Sbjct: 721 REPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVS 780
Query: 364 KWPGDIYSYKTSLIKEI 414
+ GD YK +++ +
Sbjct: 781 QIDGDFDDYKREVLEAL 797
Score = 53.1 bits (126), Expect = 4e-07
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Frame = +1
Query: 76 RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLA 255
R+ L G Q P + S G R R+ A P +L+LDEPTNHLDL + L
Sbjct: 394 RRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLN 453
Query: 256 DAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK-------TSLIKEI 414
+ + + LL+VSHD + V +I D + + G+ ++K L+K+
Sbjct: 454 NYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQY 513
Query: 415 EREHTRM 435
E++ ++
Sbjct: 514 EKQEKKL 520
>sp|P44808|Y658_HAEIN Probable ABC transporter ATP-binding protein HI0658
Length = 638
Score = 85.9 bits (211), Expect = 5e-17
Identities = 42/127 (33%), Positives = 74/127 (58%)
Frame = +1
Query: 31 WMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLD 210
W M+ + + ++R LG + G + +KS S G++ R++ A + P++LLLD
Sbjct: 400 WHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLD 459
Query: 211 EPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSY 390
EPTNHLDL+ +L +A+ ++EG L++VSHD L+ EE ++ V ++ GD+ Y
Sbjct: 460 EPTNHLDLDMRQALTEALVDYEGSLVVVSHDRHLLRNTVEEFYLVHDKKVEEFKGDLEDY 519
Query: 391 KTSLIKE 411
+ L ++
Sbjct: 520 QKWLSEQ 526
Score = 60.1 bits (144), Expect = 3e-09
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +1
Query: 97 GLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPH-MLLLDEPTNHLDLETIDSLADAINEF 273
G + + I P+K+ S G R R+ A A CP +LLLDEPTNHLDL+ + L + ++
Sbjct: 137 GFSQEETIQPVKAFSGGWRMRLNLAQ-ALLCPSDLLLLDEPTNHLDLDAVIWLERWLVQY 195
Query: 274 EGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYKTSLIKEIERE 423
+G L+L+SHD + + +I ++ + ++ GD S++ ++ ++
Sbjct: 196 QGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSFEVQRATKLAQQ 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,952,047
Number of Sequences: 369166
Number of extensions: 1102885
Number of successful extensions: 3905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3863
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)