Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L21
(377 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61956|SUMO2_HUMAN Small ubiquitin-related modifier 2 pr... 106 1e-23
sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 pr... 103 2e-22
sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 pr... 103 2e-22
sp|Q6EEV6|SUMO4_HUMAN Small ubiquitin-related modifier 4 pr... 92 3e-19
sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3 91 8e-19
sp|P55853|SMT3_CAEEL Ubiquitin-like protein SMT3 89 2e-18
sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 pr... 89 3e-18
sp|Q9MZD5|SUMO1_CERNI Small ubiquitin-related modifier 1 pr... 87 1e-17
sp|P55852|SMT3_ARATH Ubiquitin-like protein SMT3 86 2e-17
sp|O13351|PMT3_SCHPO Ubiquitin-like protein pmt3/smt3 84 8e-17
>sp|P61956|SUMO2_HUMAN Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2) (HSMT3)
sp|P61957|SUMO2_MOUSE Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2)
sp|P61959|SUMO2_RAT Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2)
sp|P61958|SUMO2_PIG Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2) (MIF2 suppressor)
sp|Q6LDZ8|SUMO2_CRIGR Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2) (MIF2 suppressor)
sp|P61955|SUMO2_BOVIN Small ubiquitin-related modifier 2 precursor (SUMO-2)
(Ubiquitin-like protein SMT3B) (SMT3 homolog 2)
(Sentrin-2)
Length = 95
Score = 106 bits (265), Expect = 1e-23
Identities = 55/95 (57%), Positives = 67/95 (70%), Gaps = 5/95 (5%)
Frame = +1
Query: 4 MADNN-KEG----SAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRF 168
MAD KEG + +HIN+KV GQD +V+ FKIK++T L KLM AYC+R GL +RF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 169 IFDGVNIKETDTPTSLDMEENDTIEVFQSQTGGCY 273
FDG I ETDTP L+ME+ DTI+VFQ QTGG Y
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95
>sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 precursor (SUMO-3)
(Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
Length = 103
Score = 103 bits (256), Expect = 2e-22
Identities = 48/78 (61%), Positives = 59/78 (75%)
Frame = +1
Query: 34 EHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 213
+HIN+KV GQD +V+ FKIK++T L KLM AYC+R GL +RF FDG I ETDTP
Sbjct: 15 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 74
Query: 214 LDMEENDTIEVFQSQTGG 267
L+ME+ DTI+VFQ QTGG
Sbjct: 75 LEMEDEDTIDVFQQQTGG 92
>sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 precursor (SUMO-3)
(Ubiquitin-like protein SMT3A) (SMT3 homolog 1)
Length = 110
Score = 103 bits (256), Expect = 2e-22
Identities = 48/78 (61%), Positives = 59/78 (75%)
Frame = +1
Query: 34 EHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTPTS 213
+HIN+KV GQD +V+ FKIK++T L KLM AYC+R GL +RF FDG I ETDTP
Sbjct: 15 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQ 74
Query: 214 LDMEENDTIEVFQSQTGG 267
L+ME+ DTI+VFQ QTGG
Sbjct: 75 LEMEDEDTIDVFQQQTGG 92
>sp|Q6EEV6|SUMO4_HUMAN Small ubiquitin-related modifier 4 precursor (SUMO-4) (Small
ubiquitin-like protein 4)
Length = 95
Score = 92.4 bits (228), Expect = 3e-19
Identities = 45/85 (52%), Positives = 55/85 (64%)
Frame = +1
Query: 19 KEGSAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKET 198
K + HIN+KV GQD +V+ FKIK+ T L KLM AYC+ GL +RF F G I T
Sbjct: 11 KTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGT 70
Query: 199 DTPTSLDMEENDTIEVFQSQTGGCY 273
D P L+ME+ DTI+VFQ TGG Y
Sbjct: 71 DKPAQLEMEDEDTIDVFQQPTGGVY 95
>sp|P55857|SMT3_ORYSA Ubiquitin-like protein SMT3
Length = 100
Score = 90.9 bits (224), Expect = 8e-19
Identities = 40/83 (48%), Positives = 56/83 (67%)
Frame = +1
Query: 22 EGSAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETD 201
EG HIN+KV+GQD + F+IK++T L+KLMNAYCDR + + + F+FDG ++
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74
Query: 202 TPTSLDMEENDTIEVFQSQTGGC 270
TP L+ME+ D I+ QTGGC
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGGC 97
>sp|P55853|SMT3_CAEEL Ubiquitin-like protein SMT3
Length = 91
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/90 (45%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Frame = +1
Query: 4 MADNNKEG--SAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFD 177
MAD+ + +AE+I +KV GQD +HF++K T++ KL +Y DR G+ +++RF+FD
Sbjct: 1 MADDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFD 60
Query: 178 GVNIKETDTPTSLDMEENDTIEVFQSQTGG 267
G I + DTP +L+ME++D IEV+Q Q GG
Sbjct: 61 GRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90
>sp|P63166|SUMO1_MOUSE Small ubiquitin-related modifier 1 precursor (SUMO-1)
(Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
(Ubiquitin-homology domain protein PIC1)
sp|P63165|SUMO1_HUMAN Small ubiquitin-related modifier 1 precursor (SUMO-1)
(Ubiquitin-like protein SMT3C) (SMT3 homolog 3)
(Ubiquitin-homology domain protein PIC1) (Ubiquitin-like
protein UBL1) (GAP modifying protein 1) (GMP1) (Sentrin)
sp|Q5R6J4|SUMO1_PONPY Small ubiquitin-related modifier 1 precursor (SUMO-1)
sp|Q5E9D1|SUMO1_BOVIN Small ubiquitin-related modifier 1 precursor (SUMO-1)
Length = 101
Score = 89.0 bits (219), Expect = 3e-18
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +1
Query: 13 NNKEGSAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIK 192
+ KEG E+I +KV GQD + IHFK+K T L+KL +YC R G+ +++RF+F+G I
Sbjct: 15 DKKEG--EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA 72
Query: 193 ETDTPTSLDMEENDTIEVFQSQTGG 267
+ TP L MEE D IEV+Q QTGG
Sbjct: 73 DNHTPKELGMEEEDVIEVYQEQTGG 97
>sp|Q9MZD5|SUMO1_CERNI Small ubiquitin-related modifier 1 precursor (SUMO-1) (Sentrin)
Length = 101
Score = 87.0 bits (214), Expect = 1e-17
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +1
Query: 13 NNKEGSAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIK 192
+ KEG E+I +KV GQD + IHFK+K T L+KL +YC R G+ +++RF+F+G I
Sbjct: 15 DKKEG--EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA 72
Query: 193 ETDTPTSLDMEENDTIEVFQSQTGG 267
+ TP L MEE D IEV+ QTGG
Sbjct: 73 DNHTPKELGMEEEDVIEVYHEQTGG 97
>sp|P55852|SMT3_ARATH Ubiquitin-like protein SMT3
Length = 100
Score = 86.3 bits (212), Expect = 2e-17
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +1
Query: 10 DNNKEGSAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNI 189
D HIN+KV+GQD + F+IK++T L+KLMNAYCDR + +++ F+FDG +
Sbjct: 8 DKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRL 67
Query: 190 KETDTPTSLDMEENDTIEVFQSQTGG 267
+ TP LDME+ D I+ QTGG
Sbjct: 68 RAEQTPDELDMEDGDEIDAMLHQTGG 93
>sp|O13351|PMT3_SCHPO Ubiquitin-like protein pmt3/smt3
Length = 117
Score = 84.3 bits (207), Expect = 8e-17
Identities = 41/81 (50%), Positives = 49/81 (60%)
Frame = +1
Query: 28 SAEHINVKVQGQDCAVIHFKIKKNTALRKLMNAYCDRLGLKTSTVRFIFDGVNIKETDTP 207
S EHIN+KV GQD + FKIKK T KLM YC R G +++RF+ DG I+ TP
Sbjct: 32 STEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTP 91
Query: 208 TSLDMEENDTIEVFQSQTGGC 270
LDME+ D IE Q GGC
Sbjct: 92 AELDMEDGDQIEAVLEQLGGC 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,591,765
Number of Sequences: 369166
Number of extensions: 616131
Number of successful extensions: 1323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)