Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L18
(712 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimu... 86 1e-16
sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phospha... 70 6e-12
sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/ph... 68 2e-11
sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phospha... 63 9e-10
sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654 53 7e-07
sp|Q05205|PPB_LYSEN Alkaline phosphatase precursor (APASE) 34 0.44
sp|Q62559|IFT52_MOUSE Intraflagellar transport 52 homolog (... 31 2.8
sp|P11466|OCTC_RAT Peroxisomal carnitine O-octanoyltransfer... 30 6.3
sp|P04850|HEMA_SV5 Hemagglutinin-neuraminidase 30 6.3
sp|P32806|GYP6_YEAST GTPase-activating protein GYP6 (GAP fo... 30 6.3
>sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimum acid phosphatase) (APase6)
Length = 614
Score = 85.9 bits (211), Expect = 1e-16
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 10/189 (5%)
Frame = +2
Query: 110 FNQYKWFVNELKTANLPENRAKQPWIIVLGHRPLYCTNSDGNDCGIAADWLRYGIPFIHL 289
+ Q+ W +L + R+K PW+IV+ HRP+Y + Y +H+
Sbjct: 438 YEQWHWLQQDLAKVD----RSKTPWVIVMSHRPMYSS--------------AYSSYQLHV 479
Query: 290 M-GIEDLLYKYGVDLAIWAHEHTYERMWP------VYQEKVVNSSTPGQPYLNPKATVHI 448
E LL KYGVD + H H YER++P + +VN++T N K+ HI
Sbjct: 480 REAFEGLLLKYGVDAYLSGHIHWYERLYPLGANGTIDTAAIVNNNT--YYAHNGKSITHI 537
Query: 449 VSGSAGCQEDHDEFPQ---IEKDYSAFHSTDYGYSRMTVYNSTHLYFEQVSDDQKGKIID 619
++G AG E H EF + + YG+S++T++N T L +E + D G + D
Sbjct: 538 INGMAGNIESHSEFSDGEGLTNITALLDKVHYGFSKLTIFNETALKWELIRGDD-GTVGD 596
Query: 620 QIWLIKTKH 646
+ L+K H
Sbjct: 597 SLTLLKPSH 605
>sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phosphatase precursor (PAP)
Length = 469
Score = 70.1 bits (170), Expect = 6e-12
Identities = 60/209 (28%), Positives = 87/209 (41%), Gaps = 4/209 (1%)
Frame = +2
Query: 20 MFYSYNVGPIHFISISTEYYFYVSYGLMPLFNQYKWFVNELKTANLPENRAKQPWIIVLG 199
++YS + I +S Y SYG+ QYKW EL+ N R + PW+IVL
Sbjct: 269 LWYSIKRASAYIIVMSC----YSSYGIYT--PQYKWLEKELQGVN----RTETPWLIVLV 318
Query: 200 HRPLYCTNSDGNDCGIAADWLRYGIPFIHLMGIEDLLYKYGVDLAIWAHEHTYERMWPVY 379
H P Y + + + LR + E KY VD+ H H YER V
Sbjct: 319 HSPFYSSYVHHY---MEGETLR--------VMYEQWFVKYKVDVVFAGHVHAYERSERVS 367
Query: 380 Q--EKVVNSSTPGQPYLNPKATVHIVSGSAGCQEDH-DEFPQIEKDYSAFHSTDYGYSRM 550
+VN +P + A ++I G G E + Q + YSAF +G+ +
Sbjct: 368 NIAYNIVNGLC--EPISDESAPIYITIGDGGNSEGLLTDMMQPQPKYSAFREASFGHGLL 425
Query: 551 TVYNSTHLYFE-QVSDDQKGKIIDQIWLI 634
+ N TH YF + D D +WL+
Sbjct: 426 EIKNRTHAYFSWNRNQDGNAVAADSVWLL 454
>sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/phosphodiesterase
Length = 350
Score = 68.2 bits (165), Expect = 2e-11
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 5/173 (2%)
Frame = +2
Query: 116 QYKWFVNELKTANLPENRAKQPWIIVLGHRPL-YCTNSDGNDCGIAADWLRYGIPFIHLM 292
QYK+ L T + R QPW+I HR L Y +NS D G F
Sbjct: 171 QYKFIEECLSTVD----RKHQPWLIFTAHRVLGYSSNSWYADQG----------SFEEPE 216
Query: 293 G---IEDLLYKYGVDLAIWAHEHTYERMWPVYQEKVVNS-STPGQPYLNPKATVHIVSGS 460
G ++ L +Y VD+A + H H YER P+YQ + VN+ T +N T+ +V+G
Sbjct: 217 GRESLQKLWQRYRVDIAYFGHVHNYERTCPLYQSQCVNADKTHYSGTMN--GTIFVVAGG 274
Query: 461 AGCQEDHDEFPQIEKDYSAFHSTDYGYSRMTVYNSTHLYFEQVSDDQKGKIID 619
G + +S F DYG++++T +N + L FE + GK+ D
Sbjct: 275 GG--SHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSD-GKVYD 324
>sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phosphatase (PAP)
Length = 432
Score = 62.8 bits (151), Expect = 9e-10
Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 5/207 (2%)
Frame = +2
Query: 23 FYSYNVGPIHFISISTEYYFYVSYGLMPLFNQYKWFVNELKTANLPENRAKQPWIIVLGH 202
+YS H I +S+ +++YG QY W EL+ R++ PW+IVL H
Sbjct: 237 WYSIKRASAHIIVLSS----HIAYGRGT--PQYTWLKKELRKVK----RSETPWLIVLMH 286
Query: 203 RPLYCTNSDGNDCGIAADWLRYGIPFIHLMGIEDLLYKYGVDLAIWAHEHTYERMWPVYQ 382
PLY + N + + +R E KY VD+ H H YER V
Sbjct: 287 SPLY---NSYNHHFMEGEAMR--------TKFEAWFVKYKVDVVFAGHVHAYERSERV-- 333
Query: 383 EKVVNSSTPG--QPYLNPKATVHIVSGSAGCQEDHDE-FPQIEKDYSAFHSTDYGYSRMT 553
+ T G P + A V+I G AG D Q + +YSAF +G+
Sbjct: 334 SNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFD 393
Query: 554 VYNSTHLYFEQVSDDQKGKII--DQIW 628
+ N TH +F + +Q G + D +W
Sbjct: 394 IKNRTHAHFSW-NRNQDGVAVEADSVW 419
>sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654
Length = 529
Score = 53.1 bits (126), Expect = 7e-07
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 15/176 (8%)
Frame = +2
Query: 14 QNMFYSYNVGPIHFISISTEYYFYVSYGLMPLFN-----QYKWFVNELKTANLPENRAKQ 178
+ ++YS+ G + IS+ + Y G + Q +W EL A ++
Sbjct: 284 RGLWYSFTAGSVRVISLHNDDVCYQDGGNSYVRGYSGGEQRRWLQAELANAR---RDSEI 340
Query: 179 PWIIVLGHRPLYCTNSDGN--DCGIAADWLRYGIPFIHLMGIEDLLYKYGVDLAIWAHEH 352
W++V H+ T D N D GI +WL L +Y VDL + HEH
Sbjct: 341 DWVVVCMHQTAISTADDNNGADLGIRQEWL-------------PLFDQYQVDLVVCGHEH 387
Query: 353 TYERMWPVYQEKVVNSSTP------GQPYLNPKATVHIVSGSAGCQEDHDE--FPQ 496
YER P+ ++ TP + + TVH+V G G + + FPQ
Sbjct: 388 HYERSHPLRGALGTDTRTPIPVDTRSDLIDSTRGTVHLVIGGGGTSKPTNALLFPQ 443
>sp|Q05205|PPB_LYSEN Alkaline phosphatase precursor (APASE)
Length = 539
Score = 33.9 bits (76), Expect = 0.44
Identities = 33/131 (25%), Positives = 49/131 (37%)
Frame = +2
Query: 8 DNQNMFYSYNVGPIHFISISTEYYFYVSYGLMPLFNQYKWFVNELKTANLPENRAKQPWI 187
D +YS++VG HF+S++T +S G + Q W +L AN +P
Sbjct: 246 DRSKGYYSWDVGDWHFVSLNT-----MSGGTVAQ-AQIDWLKADL-AAN------TKPCT 292
Query: 188 IVLGHRPLYCTNSDGNDCGIAADWLRYGIPFIHLMGIEDLLYKYGVDLAIWAHEHTYERM 367
H PL S + W D LY DL + H+H Y+R
Sbjct: 293 AAYFHHPLLSRGSYSGYSQVKPFW--------------DALYAAKADLVLVGHDHNYQRY 338
Query: 368 WPVYQEKVVNS 400
+ +K S
Sbjct: 339 GKMNPDKAAAS 349
>sp|Q62559|IFT52_MOUSE Intraflagellar transport 52 homolog (Protein NGD5)
Length = 426
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 431 KATVHIVSGSAGCQEDHDEFPQIEKDYSAFHSTDYGYSRMTVYNSTHLYFEQVSD-DQKG 607
K V ++S + C FP + +HS + G+ ++ V S H++ +Q D ++
Sbjct: 178 KPAVAVLSTGSVC------FPLNRPILAFYHSKNQGFGKLAVLGSCHMFSDQYLDKEENS 231
Query: 608 KIIDQI--WL 631
KI+D + WL
Sbjct: 232 KIMDVVFQWL 241
>sp|P11466|OCTC_RAT Peroxisomal carnitine O-octanoyltransferase (COT)
Length = 612
Score = 30.0 bits (66), Expect = 6.3
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +3
Query: 444 ILYRDQQVVKRITMNFLKLKKIIQHFIPQIMDTQE*QFTILHIYTLNKFQMIKKER 611
+ Y D ++ ++ +NF+ +H+ P TQ + +IL + LN +Q++++E+
Sbjct: 88 VAYLDVRIPSQLNVNFVGPSPHFEHYWPAREGTQLERGSILLWHNLNYWQLLRREK 143
>sp|P04850|HEMA_SV5 Hemagglutinin-neuraminidase
Length = 565
Score = 30.0 bits (66), Expect = 6.3
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 25/138 (18%)
Frame = +2
Query: 80 FYVSYGLMPLF-----------NQY-KWFVNELKTANLPENRAKQPWIIVLGHRPLYCTN 223
+Y+ + L P++ NQ K+F+ ++ A +N+A Q V + Y ++
Sbjct: 296 YYLGWVLFPIYGGVIKGTSLWNNQANKYFIPQMVAALCSQNQATQ----VQNAKSSYYSS 351
Query: 224 SDGN---DCGIAADWLRYGI-------PFIH---LMGIEDLLYKYGVDLAIWAHEHTYER 364
GN GI A LR + PF + LMG E LY YG + + +++
Sbjct: 352 WFGNRMIQSGILACPLRQDLTNECLVLPFSNDQVLMGAEGRLYMYGDSVYYYQRSNSWWP 411
Query: 365 MWPVYQEKVVNSSTPGQP 418
M +Y KV + T GQP
Sbjct: 412 MTMLY--KVTITFTNGQP 427
>sp|P32806|GYP6_YEAST GTPase-activating protein GYP6 (GAP for YPT6)
Length = 458
Score = 30.0 bits (66), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 82 LCQLWFNATFQSIQMVCQRIKNCKFT*KPS 171
LC+LW+ + ++++C N KF K S
Sbjct: 389 LCELWYGKNYDDMRLICDTFINAKFGIKTS 418
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,618,748
Number of Sequences: 369166
Number of extensions: 1760498
Number of successful extensions: 4333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4323
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)