Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L16
(777 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 361 1e-99
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 360 2e-99
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 359 5e-99
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 357 2e-98
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 357 3e-98
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 356 4e-98
sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha) 355 8e-98
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 353 4e-97
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 353 4e-97
sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha) 353 4e-97
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 361 bits (927), Expect = 1e-99
Identities = 171/211 (81%), Positives = 195/211 (92%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALDS+ PP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM+VTFAPQ LTT
Sbjct: 228 LLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLTT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQVIIM
Sbjct: 288 EVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIM 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++ LIP+
Sbjct: 348 NHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPT 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 360 bits (924), Expect = 2e-99
Identities = 170/211 (80%), Positives = 195/211 (92%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALD++ PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TT
Sbjct: 228 LLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +QVII+
Sbjct: 288 EVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIIL 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P
Sbjct: 348 NHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPG 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 359 bits (921), Expect = 5e-99
Identities = 169/211 (80%), Positives = 195/211 (92%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALD++ PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP +TT
Sbjct: 228 LLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +QVII+
Sbjct: 288 EVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIIL 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P
Sbjct: 348 NHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPG 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 357 bits (917), Expect = 2e-98
Identities = 171/211 (81%), Positives = 190/211 (90%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALD + PP RPTNKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP +TT
Sbjct: 228 LLEALDCIIPPQRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPSNVTT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHEAL EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQVII+
Sbjct: 288 EVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIIL 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V++IP
Sbjct: 348 NHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPG 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 357 bits (915), Expect = 3e-98
Identities = 167/211 (79%), Positives = 194/211 (91%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LLDA+D+++PP RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP +TT
Sbjct: 226 LLDAIDAIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTT 285
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQVI++
Sbjct: 286 EVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVL 345
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GY+PVLDCHTAHIACKFAELL+KIDRRSGK LED PK KSGD+ +VK+IPS
Sbjct: 346 NHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPS 405
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 406 KPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 356 bits (913), Expect = 4e-98
Identities = 168/211 (79%), Positives = 196/211 (92%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALDS+ PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVVTFAPQ +TT
Sbjct: 228 LLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHE+L EA+PGDNVGFN+KNVSVK+IRRG+VCSDSK DPA++A F AQVIIM
Sbjct: 288 EVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIM 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GY+PVLDCHTAHIACKF EL +K+DRR+GK +EDFPK KSGDAG+V+LIP+
Sbjct: 348 NHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPT 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KP+CVE+F++Y PLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPLCVESFTDYAPLGRFAVRDMRQTVAVGVI 438
>sp|Q92005|EF1A_BRARE Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 355 bits (911), Expect = 8e-98
Identities = 170/211 (80%), Positives = 191/211 (90%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LLDALD++ PPSRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TT
Sbjct: 228 LLDALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVTT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHE+LTEA PGDNVGFN+KNVSVK+IRRGNV DSK+DP +A +F AQVII+
Sbjct: 288 EVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIIL 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V+++P
Sbjct: 348 NHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPG 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE+FS YPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPMCVESFSTYPPLGRFAVRDMRQTVAVGVI 438
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 353 bits (905), Expect = 4e-97
Identities = 169/211 (80%), Positives = 191/211 (90%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALD + PPSRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFAP +TT
Sbjct: 228 LLEALDCILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPVNVTT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHEALTEA+PGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+
Sbjct: 288 EVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIIL 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +IP
Sbjct: 348 NHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPG 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 353 bits (905), Expect = 4e-97
Identities = 169/211 (80%), Positives = 191/211 (90%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+ALD + PP+RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP +TT
Sbjct: 228 LLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTT 287
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQVII+
Sbjct: 288 EVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIIL 347
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG+I +GY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V +IP
Sbjct: 348 NHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPG 407
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 408 KPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 353 bits (905), Expect = 4e-97
Identities = 167/211 (79%), Positives = 191/211 (90%)
Frame = +2
Query: 50 LLDALDSLEPPSRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQGLTT 229
LL+A+DS+EPP RPT+KPLRLPLQDVYKIGGIGTVPVGR+ETGILKPGMVVTFAP +TT
Sbjct: 227 LLEAIDSIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGILKPGMVVTFAPSNVTT 286
Query: 230 EVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFIAQVIIM 409
EVKSVEMHHE L+E +PGDNVGFN+KNVSVKEIRRGNV DSK+DP A F AQVI++
Sbjct: 287 EVKSVEMHHEQLSEGVPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPLGAASFDAQVIVL 346
Query: 410 NHPGEIHSGYSPVLDCHTAHIACKFAELLKKIDRRSGKDLEDFPKQFKSGDAGLVKLIPS 589
NHPG++ +GY+PVLDCHTAHIACKFAELL+KIDRR+GK +E+ PK KSGDA +VK+IPS
Sbjct: 347 NHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPS 406
Query: 590 KPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 682
KPMCVE F+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 407 KPMCVEAFTEYPPLGRFAVRDMRQTVAVGVI 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,476,343
Number of Sequences: 369166
Number of extensions: 1948528
Number of successful extensions: 6392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6092
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)