Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L13-2
(146 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13200|PSD2_HUMAN 26S proteasome non-ATPase regulatory s... 64 1e-10
sp|Q8VDM4|PSD2_MOUSE 26S proteasome non-ATPase regulatory s... 64 1e-10
sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 55 4e-08
sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1... 48 8e-06
sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1 33 0.15
sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1... 30 1.3
>sp|Q13200|PSD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 (26S proteasome
regulatory subunit RPN1) (26S proteasome regulatory
subunit S2) (26S proteasome subunit p97) (Tumor necrosis
factor type 1 receptor associated protein 2) (55.11
protein)
Length = 908
Score = 63.9 bits (154), Expect = 1e-10
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = +2
Query: 2 GLLHLGKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRN 145
GL HLGKGTLT+ P+H DR LMS VAV GLLTVL+S LDV+ + ++
Sbjct: 767 GLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKS 814
>sp|Q8VDM4|PSD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 (26S proteasome
regulatory subunit RPN1) (26S proteasome regulatory
subunit S2) (26S proteasome subunit p97)
Length = 908
Score = 63.9 bits (154), Expect = 1e-10
Identities = 30/48 (62%), Positives = 37/48 (77%)
Frame = +2
Query: 2 GLLHLGKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRN 145
GL HLGKGTLT+ P+H DR LMS VAV GLLTVL+S LDV+ + ++
Sbjct: 767 GLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKS 814
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1
Length = 883
Score = 55.5 bits (132), Expect = 4e-08
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +2
Query: 2 GLLHLGKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRN 145
GLLH+GKGTL++SP H DR ++S VA GLL VL++ +D K+ +++
Sbjct: 740 GLLHMGKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKS 787
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 (Proteasome non-ATPase
subunit mts4) (19S regulatory cap region of 26S protease
subunit 2)
Length = 891
Score = 47.8 bits (112), Expect = 8e-06
Identities = 19/39 (48%), Positives = 31/39 (79%)
Frame = +2
Query: 2 GLLHLGKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLD 118
GLL+LGKGT+T++P+H +R ++ A GL+TV+++ LD
Sbjct: 748 GLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLD 786
>sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1
Length = 983
Score = 33.5 bits (75), Expect = 0.15
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 2 GLLHLGKGTLTISPHHQDRFLMSPVAVGGLLTVLISCL 115
GL+HLGKGT+T+ + D +++ V + LLTVL+ +
Sbjct: 843 GLVHLGKGTMTMDIFN-DAHVLNKVTLASLLTVLVGLI 879
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 (Proteasome non-ATPase
subunit 1)
Length = 993
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 2 GLLHLGKGTLTISPHHQDRFLMSPVAVGGLLTVLI 106
GLLHLGKGT+T+ + D +++ V + +LT +
Sbjct: 853 GLLHLGKGTMTMDVFN-DAHVLNKVTLASILTTAV 886
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,605,372
Number of Sequences: 369166
Number of extensions: 236249
Number of successful extensions: 594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1671561060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)