Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L09
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55833|RS27_HOMAM 40S ribosomal protein S27 120 1e-27
sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein ... 117 6e-27
sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 >gi|51316667|s... 117 8e-27
sp|P47904|RS27_XENLA 40S ribosomal protein S27 117 8e-27
sp|O74330|RS27_SCHPO 40S ribosomal protein S27 112 4e-25
sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4 108 3e-24
sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese e... 107 9e-24
sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1 106 2e-23
sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2 105 3e-23
sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (R... 100 1e-21
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27
Length = 84
Score = 120 bits (301), Expect = 1e-27
Identities = 53/70 (75%), Positives = 58/70 (82%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E KCKLKRLV PNSYFMDVKCPGC KI+T+FSHA +VV C GC LCQPTGGKA+L
Sbjct: 15 EKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLT 74
Query: 212 EGCSFRKKQN 241
+GCSFRKKQN
Sbjct: 75 DGCSFRKKQN 84
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein
sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein
sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein
Length = 84
Score = 117 bits (294), Expect = 6e-27
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E +K K KRLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQPTGGKARL
Sbjct: 15 EKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLT 74
Query: 212 EGCSFRKKQN 241
EGCSFR+KQ+
Sbjct: 75 EGCSFRRKQH 84
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27
sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27
sp|P42677|RS27_HUMAN 40S ribosomal protein S27 (Metallopan-stimulin 1) (MPS-1)
Length = 84
Score = 117 bits (293), Expect = 8e-27
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E K K KRLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQPTGGKARL
Sbjct: 15 EKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLT 74
Query: 212 EGCSFRKKQN 241
EGCSFR+KQ+
Sbjct: 75 EGCSFRRKQH 84
>sp|P47904|RS27_XENLA 40S ribosomal protein S27
Length = 84
Score = 117 bits (293), Expect = 8e-27
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E K K KRLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQPTGGKARL
Sbjct: 15 EKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLT 74
Query: 212 EGCSFRKKQN 241
EGCSFR+KQ+
Sbjct: 75 EGCSFRRKQH 84
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
Length = 83
Score = 112 bits (279), Expect = 4e-25
Identities = 49/69 (71%), Positives = 56/69 (81%)
Frame = +2
Query: 29 SELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARL 208
SE+ K KLK+LV P S+FMDVKCPGC ITT+FSHA +VV+C C LCQPTGGKARL
Sbjct: 14 SEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARL 73
Query: 209 MEGCSFRKK 235
MEGCSFR+K
Sbjct: 74 MEGCSFRRK 82
>sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4
Length = 84
Score = 108 bits (271), Expect = 3e-24
Identities = 49/68 (72%), Positives = 54/68 (79%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E K KLKRLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LCQPTGGKARL
Sbjct: 17 EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQ 76
Query: 212 EGCSFRKK 235
EGCSFRKK
Sbjct: 77 EGCSFRKK 84
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese efficiency related protein 1)
Length = 86
Score = 107 bits (267), Expect = 9e-24
Identities = 50/71 (70%), Positives = 57/71 (80%), Gaps = 2/71 (2%)
Frame = +2
Query: 29 SELEKCK--LKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKA 202
+ELEK K KRLV SPNS+FMDVKC GC ITT+FSH+ +VV+C GC LCQPTGGKA
Sbjct: 14 AELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKA 73
Query: 203 RLMEGCSFRKK 235
RL EGCSFR+K
Sbjct: 74 RLTEGCSFRRK 84
>sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1
Length = 84
Score = 106 bits (264), Expect = 2e-23
Identities = 48/68 (70%), Positives = 53/68 (77%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E K KLKRLV SPNS+FMDVKC GC ITT+FSH+ +VVMC C LC PTGGKA+L
Sbjct: 17 EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLT 76
Query: 212 EGCSFRKK 235
EGCSFRKK
Sbjct: 77 EGCSFRKK 84
>sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2
Length = 86
Score = 105 bits (263), Expect = 3e-23
Identities = 47/68 (69%), Positives = 54/68 (79%)
Frame = +2
Query: 32 ELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARLM 211
E K KLKRLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LCQPTGGKA+L
Sbjct: 17 EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLT 76
Query: 212 EGCSFRKK 235
EGCSFR+K
Sbjct: 77 EGCSFRRK 84
>sp|P38711|RS27B_YEAST 40S ribosomal protein S27-B (YS20) (RP61)
Length = 82
Score = 100 bits (249), Expect = 1e-21
Identities = 45/69 (65%), Positives = 51/69 (73%)
Frame = +2
Query: 29 SELEKCKLKRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQPTGGKARL 208
SE K KLK LV P SYF+DVKCPGCL ITT+FSHA + V C C+ LC PTGGKA+L
Sbjct: 14 SEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKL 73
Query: 209 MEGCSFRKK 235
EG SFR+K
Sbjct: 74 SEGTSFRRK 82
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,422,045
Number of Sequences: 369166
Number of extensions: 529345
Number of successful extensions: 1099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)