Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L05
(407 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 150 1e-36
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 150 1e-36
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 150 1e-36
sp|P06604|TBA2_DROME Tubulin alpha-2 chain 150 1e-36
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 149 2e-36
sp|P08537|TBA_XENLA Tubulin alpha chain 149 2e-36
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 149 2e-36
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 149 2e-36
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 149 2e-36
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 149 2e-36
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 150 bits (379), Expect = 1e-36
Identities = 70/74 (94%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEIVD+VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 95.1 bits (235), Expect = 5e-20
Identities = 47/62 (75%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 150 bits (379), Expect = 1e-36
Identities = 70/74 (94%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEIVD+VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 94.7 bits (234), Expect = 6e-20
Identities = 46/62 (74%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 150 bits (379), Expect = 1e-36
Identities = 70/74 (94%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 95.1 bits (235), Expect = 5e-20
Identities = 47/62 (75%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFLIFH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTH
Sbjct: 133 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P06604|TBA2_DROME Tubulin alpha-2 chain
Length = 449
Score = 150 bits (378), Expect = 1e-36
Identities = 70/74 (94%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEIVD+VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 149 bits (377), Expect = 2e-36
Identities = 68/74 (91%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 149 bits (377), Expect = 2e-36
Identities = 68/74 (91%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LL+ERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 149 bits (377), Expect = 2e-36
Identities = 68/74 (91%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 149 bits (377), Expect = 2e-36
Identities = 68/74 (91%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 149 bits (377), Expect = 2e-36
Identities = 68/74 (91%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 149 bits (377), Expect = 2e-36
Identities = 68/74 (91%), Positives = 74/74 (100%)
Frame = +3
Query: 3 HVPRAVFIDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDMVLD 182
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+D+VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 183 RIRKLADQCSGLQG 224
RIRKLADQC+GLQG
Sbjct: 121 RIRKLADQCTGLQG 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = +1
Query: 220 KGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTH 399
+GFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTH
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTH 192
Query: 400 TT 405
TT
Sbjct: 193 TT 194
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,832,952
Number of Sequences: 369166
Number of extensions: 910717
Number of successful extensions: 3038
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3007
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)