Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L02
(165 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53634|CATC_HUMAN Dipeptidyl-peptidase I precursor (DPP-... 55 4e-08
sp|Q26563|CATC_SCHMA Cathepsin C precursor 52 3e-07
sp|O97578|CATC_CANFA Dipeptidyl-peptidase I precursor (DPP-... 51 7e-07
sp|Q60HG6|CATC_MACFA Dipeptidyl-peptidase I precursor (DPP-... 51 7e-07
sp|P97821|CATC_MOUSE Dipeptidyl-peptidase I precursor (DPP-... 50 1e-06
sp|P80067|CATC_RAT Dipeptidyl-peptidase I precursor (DPP-I)... 49 3e-06
sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase p... 42 3e-04
sp|P43508|CPR4_CAEEL Cathepsin B-like cysteine proteinase 4... 42 3e-04
sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6... 42 3e-04
sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (... 41 8e-04
>sp|P53634|CATC_HUMAN Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 463
Score = 55.5 bits (132), Expect = 4e-08
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 2 GWGENGYFRIRRGNDECGIESLGVASEPI 88
GWGENGYFRIRRG DEC IES+ VA+ PI
Sbjct: 432 GWGENGYFRIRRGTDECAIESIAVAATPI 460
>sp|Q26563|CATC_SCHMA Cathepsin C precursor
Length = 454
Score = 52.4 bits (124), Expect = 3e-07
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEPIL 91
WGE GYFRI RG DECG+ESLGV +P+L
Sbjct: 426 WGEQGYFRILRGTDECGVESLGVRFDPVL 454
>sp|O97578|CATC_CANFA Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain 1;
Dipeptidyl-peptidase I heavy chain 2;
Dipeptidyl-peptidase I heavy chain 3;
Dipeptidyl-peptidase I heavy chain 4;
Dipeptidyl-peptidase I light chain]
Length = 435
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEPI 88
WGE+GYFRIRRG DEC IES+ VA+ PI
Sbjct: 405 WGEDGYFRIRRGTDECAIESIAVAATPI 432
>sp|Q60HG6|CATC_MACFA Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 463
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEPI 88
WGE+GYFRIRRG DEC IES+ VA+ PI
Sbjct: 433 WGEDGYFRIRRGTDECAIESIAVAATPI 460
>sp|P97821|CATC_MOUSE Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 462
Score = 50.4 bits (119), Expect = 1e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEPI 88
WGE+GYFRIRRG DEC IES+ VA+ PI
Sbjct: 432 WGESGYFRIRRGTDECAIESIAVAAIPI 459
>sp|P80067|CATC_RAT Dipeptidyl-peptidase I precursor (DPP-I) (DPPI) (Cathepsin C)
(Cathepsin J) (Dipeptidyl transferase) [Contains:
Dipeptidyl-peptidase I exclusion domain chain;
Dipeptidyl-peptidase I heavy chain; Dipeptidyl-peptidase
I light chain]
Length = 462
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEPI 88
WGE+GYFRIRRG DEC IES+ +A+ PI
Sbjct: 432 WGESGYFRIRRGTDECAIESIAMAAIPI 459
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase precursor (Antigen Sm31)
Length = 340
Score = 42.4 bits (98), Expect = 3e-04
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVA 76
WGENGYFRI RG DEC IES +A
Sbjct: 313 WGENGYFRIVRGRDECSIESEVIA 336
>sp|P43508|CPR4_CAEEL Cathepsin B-like cysteine proteinase 4 precursor (Cysteine
protease-related 4)
Length = 335
Score = 42.4 bits (98), Expect = 3e-04
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEP 85
WGENGYFRI RG +ECGIE V P
Sbjct: 307 WGENGYFRIIRGTNECGIEHAVVGGVP 333
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 precursor (Cysteine
protease-related 6)
Length = 379
Score = 42.4 bits (98), Expect = 3e-04
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEPIL*MLT 103
WGE+G+FRI RG DECGIES V P L LT
Sbjct: 331 WGEDGFFRILRGVDECGIESGVVGGIPKLNSLT 363
>sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (APP secretase) (APPS)
[Contains: Cathepsin B light chain; Cathepsin B heavy
chain]
Length = 339
Score = 41.2 bits (95), Expect = 8e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +2
Query: 5 WGENGYFRIRRGNDECGIESLGVASEP 85
WG+NG+F+I RG D CGIES VA P
Sbjct: 304 WGDNGFFKILRGQDHCGIESEVVAGIP 330
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,634,582
Number of Sequences: 369166
Number of extensions: 218417
Number of successful extensions: 628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)