Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K24
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chro... 30 2.4
sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix pr... 30 4.1
sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB 29 6.9
sp|O65782|C83B1_ARATH Cytochrome P450 83B1 29 6.9
sp|Q60296|T1SH_METJA Putative type I restriction enzyme Mja... 29 6.9
sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase) 29 6.9
sp|Q8A294|HPPA_BACTN Pyrophosphate-energized proton pump (P... 29 6.9
>sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chromosome I
Length = 492
Score = 30.4 bits (67), Expect = 2.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 82 GQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVESSILNHKG 207
G I G+L WN + H+K+YY VL+ S L+ G
Sbjct: 455 GSCIDGRLTSAWN-----WANNIHTKDYYRVLLMSGFLSFNG 491
>sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix protein 2 precursor (ECM3 homolog)
(NV domain containing protein 1)
Length = 3160
Score = 29.6 bits (65), Expect = 4.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 49 DQTFVARAKHEGQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVE 183
D+ F +A+ + Q+ PG+ W ++ G EHS+ + VL E
Sbjct: 1804 DRDFKGKAQKQVQFNPGQTRASWRVRILSDGEHEHSETFQVVLSE 1848
>sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB
Length = 373
Score = 28.9 bits (63), Expect = 6.9
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 220 WADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEVHRVDSVE 399
+A GE++ K GG AR + VVVG G + Y HR+D++E
Sbjct: 213 YATGEHLRKAVPSGG---------ARHPIEFYVVVGDEIAGIEAGVYHYNVRHHRLDAIE 263
Query: 400 VLCCSTK 420
+ S K
Sbjct: 264 IASTSLK 270
>sp|O65782|C83B1_ARATH Cytochrome P450 83B1
Length = 499
Score = 28.9 bits (63), Expect = 6.9
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 61 VARAKHEGQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVESSILNHKGYEWRWADGENV 240
+A AK G IP K + N V+ A N E + E + HKG +++ D E +
Sbjct: 373 IADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMNEHKGVDFKGQDFELL 432
Query: 241 PKGA 252
P G+
Sbjct: 433 PFGS 436
>sp|Q60296|T1SH_METJA Putative type I restriction enzyme MjaXP specificity protein (S
protein) (S.MjaXP)
Length = 432
Score = 28.9 bits (63), Expect = 6.9
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -2
Query: 196 LKYLIPPKLRNNFYYVLRLRKLQKLHSSLQPIFQEYID--LRVLLLRQKSDHQLSQL 32
L YL + N + + LQK HS +QP+F++ I+ ++++L++ D L +L
Sbjct: 366 LPYLKISDIENKYIIIPPQPILQKFHSLVQPLFEKIINNQKQIMVLKKIRDALLPKL 422
>sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase)
Length = 994
Score = 28.9 bits (63), Expect = 6.9
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 133 AYGGAEHSKNYYEVLVESSILNHKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGG 312
A G + + Y+ LVE G+ W W D A+ G+ DG P++ + G
Sbjct: 514 AMGNSPGDLHAYQTLVEQYDSFIGGFVWEWCD------HAIQTGMKDGNPIFRYGGDFGE 567
Query: 313 QVVVGKY 333
++ G +
Sbjct: 568 KLHDGNF 574
>sp|Q8A294|HPPA_BACTN Pyrophosphate-energized proton pump (Pyrophosphate-energized
inorganic pyrophosphatase) (H+-PPase) (Membrane-bound
proton-translocating pyrophosphatase)
Length = 734
Score = 28.9 bits (63), Expect = 6.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 247 GAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEVHRVDSV 396
G ++GG++ G L + +N GG K + + G + GGEVH+ V
Sbjct: 646 GLLIGGLSTGFVLAIFMANAGGAWDNAKKYVEEG-NFGGKGGEVHKATVV 694
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,136,405
Number of Sequences: 369166
Number of extensions: 1289384
Number of successful extensions: 3895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3889
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)