Planarian EST Database


Dr_sW_002_K22

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_002_K22
         (403 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19877|RS23_CAEEL  40S ribosomal protein S23                   246   9e-66
sp|P62267|RS23_MOUSE  40S ribosomal protein S23 >gi|54039461...   245   3e-65
sp|Q90YQ1|RS23_ICTPU  40S ribosomal protein S23                   245   3e-65
sp|Q6SA96|RS23_PIG  40S ribosomal protein S23                     244   5e-65
sp|Q9GRJ3|RS23_LUMRU  40S ribosomal protein S23                   243   1e-64
sp|Q86FP7|RS23_DERVA  40S ribosomal protein S23                   242   2e-64
sp|P90707|RS23_BRUMA  40S ribosomal protein S23                   241   5e-64
sp|Q962Q7|RS23_SPOFR  40S ribosomal protein S23 >gi|52000789...   240   7e-64
sp|Q8T3U2|RS23_DROME  40S ribosomal protein S23                   238   3e-63
sp|Q9DFR4|RS23_GILMI  40S ribosomal protein S23                   232   2e-61
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
          Length = 143

 Score =  246 bits (629), Expect = 9e-66
 Identities = 117/132 (88%), Positives = 128/132 (96%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVR
Sbjct: 12  KLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+
Sbjct: 72  VQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLI 131

Query: 363 ALYKGKKERPRA 398
           AL+KGKKERPR+
Sbjct: 132 ALFKGKKERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
 sp|P62298|RS23_CHILA 40S ribosomal protein S23
 sp|P62266|RS23_HUMAN 40S ribosomal protein S23
 sp|P62268|RS23_RAT 40S ribosomal protein S23
          Length = 143

 Score =  245 bits (625), Expect = 3e-65
 Identities = 118/132 (89%), Positives = 125/132 (94%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72  VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131

Query: 363 ALYKGKKERPRA 398
           ALYKGKKERPR+
Sbjct: 132 ALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
          Length = 143

 Score =  245 bits (625), Expect = 3e-65
 Identities = 118/132 (89%), Positives = 126/132 (95%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72  VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131

Query: 363 ALYKGKKERPRA 398
           ALYKGKKERPR+
Sbjct: 132 ALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
          Length = 143

 Score =  244 bits (623), Expect = 5e-65
 Identities = 118/132 (89%), Positives = 124/132 (93%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KLR HR+  +W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72  VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131

Query: 363 ALYKGKKERPRA 398
           ALYKGKKERPR+
Sbjct: 132 ALYKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
          Length = 143

 Score =  243 bits (620), Expect = 1e-64
 Identities = 117/132 (88%), Positives = 127/132 (96%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLL
Sbjct: 72  VQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLL 131

Query: 363 ALYKGKKERPRA 398
           ALYK KKERPR+
Sbjct: 132 ALYKQKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
          Length = 143

 Score =  242 bits (617), Expect = 2e-64
 Identities = 117/132 (88%), Positives = 125/132 (94%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           K R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLL
Sbjct: 72  VQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 131

Query: 363 ALYKGKKERPRA 398
           ALYK KKERPR+
Sbjct: 132 ALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
          Length = 143

 Score =  241 bits (614), Expect = 5e-64
 Identities = 116/132 (87%), Positives = 125/132 (94%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+
Sbjct: 72  VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLI 131

Query: 363 ALYKGKKERPRA 398
           AL+KGKKERPR+
Sbjct: 132 ALFKGKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
          Length = 143

 Score =  240 bits (613), Expect = 7e-64
 Identities = 114/128 (89%), Positives = 124/128 (96%)
 Frame = +3

Query: 15  HRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 194
           HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75

Query: 195 KNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 374
           KNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76  KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135

Query: 375 GKKERPRA 398
            KKERPR+
Sbjct: 136 EKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
          Length = 143

 Score =  238 bits (608), Expect = 3e-63
 Identities = 115/128 (89%), Positives = 123/128 (96%)
 Frame = +3

Query: 15  HRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 194
           HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75

Query: 195 KNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 374
           KNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76  KNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135

Query: 375 GKKERPRA 398
            KKERPR+
Sbjct: 136 EKKERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
          Length = 143

 Score =  232 bits (592), Expect = 2e-61
 Identities = 111/132 (84%), Positives = 122/132 (92%)
 Frame = +3

Query: 3   KLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 182
           KLR HR++++W DK YKKAHLGT  K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVR
Sbjct: 12  KLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVR 71

Query: 183 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLL 362
           VQLIKNGKKITAFVPNDGCLNF EENDEVLV+GFGR  HAVGDIPGVRFK+V++ANVSLL
Sbjct: 72  VQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLL 131

Query: 363 ALYKGKKERPRA 398
           ALYKG KERP++
Sbjct: 132 ALYKGXKERPKS 143
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,779,165
Number of Sequences: 369166
Number of extensions: 819599
Number of successful extensions: 3012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2780
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)