Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K18
(774 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03924|ZN117_HUMAN Zinc finger protein 117 (Zinc finger ... 32 1.9
sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132) 32 2.5
sp|P67414|URK_STRR6 Uridine kinase (Uridine monophosphokina... 32 2.5
sp|Q9CF21|URK_LACLA Uridine kinase (Uridine monophosphokina... 32 2.5
sp|Q49Y49|URK_STAS1 Uridine kinase (Uridine monophosphokina... 30 5.6
sp|Q88WR0|URK_LACPL Uridine kinase (Uridine monophosphokina... 30 7.3
sp|P17038|ZNF43_HUMAN Zinc finger protein 43 (Zinc protein ... 30 9.5
sp|Q8DTG1|URK_STRMU Uridine kinase (Uridine monophosphokina... 30 9.5
sp|Q896E3|URK_CLOTE Uridine kinase (Uridine monophosphokina... 30 9.5
sp|P27730|CAN_SCHMA Calpain (Calcium-activated neutral prot... 30 9.5
>sp|Q03924|ZN117_HUMAN Zinc finger protein 117 (Zinc finger protein HPF9)
Length = 418
Score = 32.0 bits (71), Expect = 1.9
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +2
Query: 188 KCVRRSNTRYENCQKCPKNIRKKRFCTANKYLRTTVYFNRLVGCFRCVSDQKTSTKEIKC 367
K + RYE C++C K + T +KY+ T +L C C S+ K
Sbjct: 275 KLIHTGEKRYE-CEECGKAFNRSSKLTEHKYIHTG---EKLYKCEECDKAFNLSSTLTKH 330
Query: 368 KTRKVVKRINKTTECKTIYKR 430
K +++ K EC +K+
Sbjct: 331 KVIHTGEKLYKCKECGKAFKQ 351
>sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132)
Length = 96
Score = 31.6 bits (70), Expect = 2.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 608 CPKNTVTKLCIPRQGTVRIVHKIYRVNKKSCRCYASFRTRYKQIRCP 748
C K T LC+P+ +Y NK+SC CY +++T+ + +CP
Sbjct: 59 CQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKCP 96
>sp|P67414|URK_STRR6 Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
sp|P67413|URK_STRPN Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
Length = 212
Score = 31.6 bits (70), Expect = 2.5
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 126 DAIFVLENGELHDIFMLLLD*NVFVDLTLDMKIVRNVQKTLEKK 257
+ I VLE+ L D L+D +FVD D++I+R +++ +E++
Sbjct: 111 EGILVLEDKRLRD----LMDIKIFVDTDDDVRIIRRIKRDMEER 150
>sp|Q9CF21|URK_LACLA Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
Length = 206
Score = 31.6 bits (70), Expect = 2.5
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 126 DAIFVLENGELHDIFMLLLD*NVFVDLTLDMKIVRNVQKTLEKK 257
+ I VLE+ L D L+D +FVD D++I+R +++ +E++
Sbjct: 110 EGILVLEDERLRD----LMDIKIFVDTDDDVRIIRRIRRDIEER 149
>sp|Q49Y49|URK_STAS1 Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
Length = 207
Score = 30.4 bits (67), Expect = 5.6
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 126 DAIFVLENGELHDIFMLLLD*NVFVDLTLDMKIVRNVQKTLEKK 257
+ IF LEN L D L+D ++VD D++I+R + + E++
Sbjct: 110 EGIFALENKTLRD----LMDVKIYVDTDADLRILRRLLRDTEER 149
>sp|Q88WR0|URK_LACPL Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
Length = 209
Score = 30.0 bits (66), Expect = 7.3
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 126 DAIFVLENGELHDIFMLLLD*NVFVDLTLDMKIVRNVQKTLEKK 257
+ + +L++ L D L+D VFVD D++I+R +Q+ ++++
Sbjct: 115 EGVLILDDQRLRD----LMDIKVFVDTDDDIRIIRRIQRDIKER 154
>sp|P17038|ZNF43_HUMAN Zinc finger protein 43 (Zinc protein HTF6) (Zinc finger protein
KOX27)
Length = 803
Score = 29.6 bits (65), Expect = 9.5
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 197 RRSNTRYE--NCQKCPKNIRKKRFCTANKYLRTTVYFNRLVGCFRCVSDQKTSTKEIK 364
+++ TRY+ C++C K K T +K +RT F + C + + T+ K
Sbjct: 243 KKNYTRYKLYKCEECGKAFNKSSILTTHKIIRTGEKFYKCKECAKAFNQSSNLTEHKK 300
>sp|Q8DTG1|URK_STRMU Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
Length = 209
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 126 DAIFVLENGELHDIFMLLLD*NVFVDLTLDMKIVRNVQKTLEKK 257
+ I VLE+ L D L+D +FVD D++I+R +++ ++++
Sbjct: 111 EGILVLEDQRLRD----LMDIKLFVDTDDDIRIIRRIKRDMQER 150
>sp|Q896E3|URK_CLOTE Uridine kinase (Uridine monophosphokinase) (Cytidine
monophosphokinase)
Length = 209
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 126 DAIFVLENGELHDIFMLLLD*NVFVDLTLDMKIVRNVQKTLEKK 257
+ I VLE E+ D LLD ++VD D++I+R + + ++++
Sbjct: 111 EGILVLEEKEIRD----LLDIKIYVDTDADVRIIRRLVRDIKER 150
>sp|P27730|CAN_SCHMA Calpain (Calcium-activated neutral proteinase) (CANP)
Length = 758
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 191 CVRRSNTRYENCQKCPKNIRKKRFCTANKYLRTTVY 298
C+ R T +E + PKNI +A YLR +VY
Sbjct: 722 CMVRLKTAFETIEAHPKNIEGTSLFSAEDYLRFSVY 757
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,123,434
Number of Sequences: 369166
Number of extensions: 1413419
Number of successful extensions: 3875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3873
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)