Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K14
(511 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 75 1e-13
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 74 3e-13
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 74 3e-13
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 73 4e-13
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 73 4e-13
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 73 4e-13
sp|P62169|CSPC_BACAN Cold shock-like protein cspC >gi|49061... 70 2e-12
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 69 5e-12
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 69 8e-12
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 68 1e-11
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/112 (41%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 34 ATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 92
Query: 169 QGSKGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 324
+G KG EA K +N R Y R G +Y+ Q+Y N
Sbjct: 93 EGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNN 143
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 34 ATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 92
Query: 169 QGSKGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 324
+G KG EA K +N+ R Y R G +Y+ Q+Y +
Sbjct: 93 EGEKGAEAANVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQ-QNYQNS 143
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 73.6 bits (179), Expect = 3e-13
Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A VSG VKWFN KSGYGFI R+D + DVFVH ++I N S+ DGE+V+FDVV
Sbjct: 30 ASQVSGTVKWFNVKSGYGFINRDDTKE-DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVV 88
Query: 169 QGSKGLEA 192
+G KG EA
Sbjct: 89 EGEKGNEA 96
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 72.8 bits (177), Expect = 4e-13
Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 54 ATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 112
Query: 169 QGSKGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 324
+G KG EA K +N R Y R G +Y+ Q+Y +
Sbjct: 113 EGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 163
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 72.8 bits (177), Expect = 4e-13
Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 56 ATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 114
Query: 169 QGSKGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 324
+G KG EA K +N R Y R G +Y+ Q+Y +
Sbjct: 115 EGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 165
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 72.8 bits (177), Expect = 4e-13
Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 53 ATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 111
Query: 169 QGSKGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 324
+G KG EA K +N R Y R G +Y+ Q+Y +
Sbjct: 112 EGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 162
>sp|P62169|CSPC_BACAN Cold shock-like protein cspC
sp|P62170|CSPC_BACCE Cold shock-like protein cspC
sp|P62171|CSPC_BACCR Cold shock-like protein cspC
Length = 65
Score = 70.5 bits (171), Expect = 2e-12
Identities = 31/61 (50%), Positives = 46/61 (75%)
Frame = +1
Query: 10 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLE 189
+ G VKWFN++ G+GFI+REDG+ DVFVH S+I SL +G++V+FD+V G++G +
Sbjct: 1 MQGRVKWFNAEKGFGFIEREDGD--DVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQ 58
Query: 190 A 192
A
Sbjct: 59 A 59
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 69.3 bits (168), Expect = 5e-12
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 39 ATQVQGTVKWFNVRNGYGFINRNDSKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97
Query: 169 QGSKGLEA 192
+G KG EA
Sbjct: 98 EGEKGAEA 105
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 68.6 bits (166), Expect = 8e-12
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 39 ATQVQGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97
Query: 169 QGSKGLEA 192
+G KG EA
Sbjct: 98 EGEKGAEA 105
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 67.8 bits (164), Expect = 1e-11
Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +1
Query: 1 ARGVSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVV 168
A V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV
Sbjct: 80 ATKVLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138
Query: 169 QGSKGLEA 192
+G KG EA
Sbjct: 139 EGEKGAEA 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,827,174
Number of Sequences: 369166
Number of extensions: 847494
Number of successful extensions: 2240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2168
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)