Planarian EST Database


Dr_sW_002_K11

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_002_K11
         (835 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6RUV5|RAC1_RAT  Ras-related C3 botulinum toxin substrate...   327   2e-89
sp|P40792|RAC1_DROME  Ras-related protein Rac1                    325   9e-89
sp|Q9TU25|RAC2_BOVIN  Ras-related C3 botulinum toxin substra...   323   4e-88
sp|P15153|RAC2_HUMAN  Ras-related C3 botulinum toxin substra...   322   8e-88
sp|P60764|RAC3_MOUSE  Ras-related C3 botulinum toxin substra...   321   1e-87
sp|Q05144|RAC2_MOUSE  Ras-related C3 botulinum toxin substra...   320   2e-87
sp|P48554|RAC2_DROME  Ras-related protein Rac2                    319   7e-87
sp|O88931|RAC2_CAVPO  Ras-related C3 botulinum toxin substra...   318   9e-87
sp|Q03206|RAC1_CAEEL  RAS-related protein rac-1 (Cell-corpse...   308   2e-83
sp|O95916|RAC4_HUMAN  Putative Ras-related C3 botulinum toxi...   301   2e-81
>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
 sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
 sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like
           protein TC25)
 sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Rac2)
 sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
          Length = 192

 Score =  327 bits (839), Expect = 2e-89
 Identities = 156/190 (82%), Positives = 172/190 (90%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL++ +S+ENVRAKWYPE+ HHCPNTPIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    E  ++++ TPI YPQGL +AKEIGAVKYLECSALTQ+GLK+VFDEAIRAVLCP 
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

Query: 667 PPRKKTCKFL 696
           P +K+  K L
Sbjct: 181 PVKKRKRKCL 190
>sp|P40792|RAC1_DROME Ras-related protein Rac1
          Length = 192

 Score =  325 bits (833), Expect = 9e-89
 Identities = 156/192 (81%), Positives = 171/192 (89%), Gaps = 2/192 (1%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL+N +S+ENVRAKWYPE+ HHCP+TPIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCP- 663
           ++    E  RD++  PI YPQGL +AKEIGAVKYLECSALTQKGLK+VFDEAIR+VLCP 
Sbjct: 121 DDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRSVLCPV 180

Query: 664 -KPPRKKTCKFL 696
            +P  K+ C  L
Sbjct: 181 LQPKSKRKCALL 192
>sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
          Length = 192

 Score =  323 bits (828), Expect = 4e-88
 Identities = 154/192 (80%), Positives = 173/192 (90%), Gaps = 2/192 (1%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD+KPVNLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL++ +SYENVRAKW+PE+ HHCP+TPIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    E  ++++  PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEAIRAVLCP+
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180

Query: 667 P--PRKKTCKFL 696
           P  P+K+ C  L
Sbjct: 181 PTRPQKRPCSIL 192
>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (Small G
           protein) (GX)
          Length = 192

 Score =  322 bits (825), Expect = 8e-88
 Identities = 154/192 (80%), Positives = 172/192 (89%), Gaps = 2/192 (1%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD+KPVNLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL++ +SYENVRAKW+PE+ HHCP+TPIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    E  ++++  PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEAIRAVLCP+
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180

Query: 667 PPR--KKTCKFL 696
           P R  K+ C  L
Sbjct: 181 PTRQQKRACSLL 192
>sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
 sp|P60763|RAC3_HUMAN Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
          Length = 192

 Score =  321 bits (823), Expect = 1e-87
 Identities = 151/184 (82%), Positives = 168/184 (91%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPVNLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL++ +S+ENVRAKWYPE+ HHCP+TPI+LVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    E  RD++  PI YPQGL +A+EIG+VKYLECSALTQ+GLK+VFDEAIRAVLCP 
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP 180

Query: 667 PPRK 678
           P +K
Sbjct: 181 PVKK 184
>sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7
           protein)
          Length = 192

 Score =  320 bits (821), Expect = 2e-87
 Identities = 153/192 (79%), Positives = 172/192 (89%), Gaps = 2/192 (1%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD+KPVNLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL++ +SYENVRAKW+PE+ HHCP+TPIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    E  ++++  PI YPQGL LAK+I +VKYLECSALTQ+GLK+VFDEAIRAVLCP+
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180

Query: 667 PPR--KKTCKFL 696
           P R  K+ C  L
Sbjct: 181 PTRQQKRPCSLL 192
>sp|P48554|RAC2_DROME Ras-related protein Rac2
          Length = 192

 Score =  319 bits (817), Expect = 7e-87
 Identities = 152/192 (79%), Positives = 170/192 (88%), Gaps = 2/192 (1%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL+N +S+ENVRAKW+PE+ HHCP+ PIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCP- 663
           ++    E  +D++ TPI YPQGL +AKEI AVKYLECSALTQKGLK+VFDEAIR+VLCP 
Sbjct: 121 DDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQKGLKTVFDEAIRSVLCPV 180

Query: 664 -KPPRKKTCKFL 696
            + P++  C  L
Sbjct: 181 VRGPKRHKCALL 192
>sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
          Length = 192

 Score =  318 bits (816), Expect = 9e-87
 Identities = 151/192 (78%), Positives = 171/192 (89%), Gaps = 2/192 (1%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD+KPVNLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFLICFSL++ +SYENV A WYP++ HHCP+TPIIL+GTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    E  ++++  PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEAIRAVLCP+
Sbjct: 121 DDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180

Query: 667 P--PRKKTCKFL 696
           P  P+K+ C  L
Sbjct: 181 PTRPQKRACSLL 192
>sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10)
           (CErac1)
          Length = 191

 Score =  308 bits (788), Expect = 2e-83
 Identities = 148/186 (79%), Positives = 163/186 (87%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD +P+NLGLWDTAG
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQTDVFL+CF+L N +S+ENVRAKWYPE++HHCPNTPIILVGTK DLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           E+    E  R+RR  P++  QG V+AKEI AVKYLECSALTQ+GLK VFDEAIRAVL P 
Sbjct: 121 EDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAVLTPP 180

Query: 667 PPRKKT 684
              KK+
Sbjct: 181 QRAKKS 186
>sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxin substrate 4 (p21-Rac4)
          Length = 192

 Score =  301 bits (770), Expect = 2e-81
 Identities = 145/190 (76%), Positives = 165/190 (86%)
 Frame = +1

Query: 127 MQGIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDNKPVNLGLWDTAG 306
           MQ IK VVVGDGAVGKTCLLISYTTNAFPGE IPT FDNYSANVMVD K VNLGLW+TAG
Sbjct: 1   MQAIKGVVVGDGAVGKTCLLISYTTNAFPGEDIPTAFDNYSANVMVDGKLVNLGLWNTAG 60

Query: 307 QEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIILVGTKLDLR 486
           QEDYDRLRPLSYPQ DVFLICFSL++ +S+ENV AKWYPE+ HHCPNTPIILVGTKLDLR
Sbjct: 61  QEDYDRLRPLSYPQADVFLICFSLVSPASFENVLAKWYPEVQHHCPNTPIILVGTKLDLR 120

Query: 487 ENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEAIRAVLCPK 666
           ++    +  ++++ TPI YPQGL +AKE+GAVKYLEC ALT++GLK+VFDEAIRAVLCP 
Sbjct: 121 DDKDRIQKLKEKKLTPITYPQGLAMAKEMGAVKYLECLALTRRGLKTVFDEAIRAVLCPP 180

Query: 667 PPRKKTCKFL 696
           P +K+  K L
Sbjct: 181 PVKKRKRKCL 190
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,165,909
Number of Sequences: 369166
Number of extensions: 2105627
Number of successful extensions: 5590
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5132
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)