Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K08
(707 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8U0N1|TRUD_PYRFU Probable tRNA pseudouridine synthase D... 38 0.030
sp|O59207|TRUD_PYRHO Probable tRNA pseudouridine synthase D... 38 0.030
sp|Q9V107|TRUD_PYRAB Probable tRNA pseudouridine synthase D... 35 0.20
sp|P57160|Y052_BUCAI Hypothetical protein BU052 32 1.3
sp|P26939|TRPC_METTM Indole-3-glycerol phosphate synthase (... 32 2.2
sp|P46893|PPSA_STAMA Probable phosphoenolpyruvate synthase ... 30 4.8
sp|Q9XT84|IL2_DELLE Interleukin-2 precursor (IL-2) (T-cell ... 30 4.8
sp|O97513|IL2_ORCOR Interleukin-2 precursor (IL-2) (T-cell ... 30 4.8
sp|Q02252|MMSA_HUMAN Methylmalonate-semialdehyde dehydrogen... 30 6.3
sp|P19716|FUS_MUMP1 Fusion glycoprotein F0 precursor [Conta... 30 8.2
>sp|Q8U0N1|TRUD_PYRFU Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 407
Score = 37.7 bits (86), Expect = 0.030
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = +2
Query: 56 KSLSLKNNEFTEILFPEICYSDIETISRLKDTKPFEIGHTQNVSFLSINVEIQNKWVHIF 235
K L K+ + FP + + R K+T ++ +FL + I ++H F
Sbjct: 203 KFLETKDVDLALREFPNFLRYERAMLYRYKETGSWK------KAFLVLPRPILRIFIHSF 256
Query: 236 VNHLYNLIISNKVDKIILLSSIFPIDI------PQTLSKRSFFETSFNSDYLTKHGENVE 397
++L+NL +S ++++ + L+ P DI L KR++ T N D++ + + E
Sbjct: 257 QSYLFNLYLSRRIEEGLPLNKALPGDIVIQVKKGIPLRKRTYRVTENNVDFVNRKIKEGE 316
Query: 398 MNVEGLFMNYFFQ 436
V G Y ++
Sbjct: 317 AMVSGPIFGYMYR 329
>sp|O59207|TRUD_PYRHO Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 409
Score = 37.7 bits (86), Expect = 0.030
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = +2
Query: 56 KSLSLKNNEFTEILFPEICYSDIETISRLKDTKPFEIGHTQNVSFLSINVEIQNKWVHIF 235
K L KN + FP+ + + + ++T ++ SFL++ I ++H F
Sbjct: 204 KFLETKNVDLALEEFPKFLRYERAMLYKYRETGSWKR------SFLALPRPILRIFIHAF 257
Query: 236 VNHLYNLIISNKVDKIILLSSIFPIDIPQTLSK------RSFFETSFNSDYLTKHGENVE 397
++L+NL IS ++++ L+ P DI + K R++ T N D++ + E
Sbjct: 258 QSYLFNLYISRRIEEGFPLNEALPGDIVVQVKKGIPLRDRTYRVTESNLDFVNEKIMQGE 317
Query: 398 MNVEGLFMNYFFQ 436
V G Y ++
Sbjct: 318 AMVSGPIFGYSYR 330
>sp|Q9V107|TRUD_PYRAB Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 406
Score = 35.0 bits (79), Expect = 0.20
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Frame = +2
Query: 98 FPEICYSDIETISRLKDTKPFEIGHTQNVSFLSINVEIQNKWVHIFVNHLYNLIISNKVD 277
FP+ + + R ++T+ ++ +FL + I ++H F +L+NL +S +++
Sbjct: 216 FPKFLRYERAMLYRYRETRSWK------KAFLVLPRPILRIFIHAFQAYLFNLYLSRRIE 269
Query: 278 KIILLSSIFPIDIPQTLSK------RSFFETSFNSDYLTKHGENVEMNVEGLFMNYFFQI 439
+ + L+ P DI + + R++ T N D++ + + E V G Y ++
Sbjct: 270 EGLPLNEAIPGDIVVQVKRGIPLRTRTYRVTETNVDFVNEKIKRGEAMVSGPIFGYSYRK 329
Query: 440 A 442
A
Sbjct: 330 A 330
>sp|P57160|Y052_BUCAI Hypothetical protein BU052
Length = 144
Score = 32.3 bits (72), Expect = 1.3
Identities = 30/113 (26%), Positives = 50/113 (44%)
Frame = +2
Query: 47 RAIKSLSLKNNEFTEILFPEICYSDIETISRLKDTKPFEIGHTQNVSFLSINVEIQNKWV 226
R + S S N F I ++ D + + + F+ GH N SINV ++N
Sbjct: 31 RTLLSKSKMINNFQAI---KLINQDKAIVVDTRSLESFKEGHILN----SINVPLKN--- 80
Query: 227 HIFVNHLYNLIISNKVDKIILLSSIFPIDIPQTLSKRSFFETSFNSDYLTKHG 385
IF+ + + I I++LS + ++ + FFE FN Y+ K+G
Sbjct: 81 -IFLGKIKEIEIYKMFPIILVLSDTYKVNA----CIKKFFEYGFNRVYILKNG 128
>sp|P26939|TRPC_METTM Indole-3-glycerol phosphate synthase (IGPS)
Length = 274
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 704 TKTIYYHTTIDYCSRSPGQTNLRCTSSYSPPILIQDFPHFPYQILQKNISAAS 546
T+ Y+H +I++ LR S Y P+L++DF YQI Q S AS
Sbjct: 88 TENRYFHGSIEF---------LREASEYGIPLLMKDFVVDEYQIYQARASGAS 131
>sp|P46893|PPSA_STAMA Probable phosphoenolpyruvate synthase (Pyruvate, water dikinase)
(PEP synthase)
Length = 834
Score = 30.4 bits (67), Expect = 4.8
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 449 KRLPLNVFWVIGNKCRNGTPT-DSSLENIRTLQSMLQKC----FSVEFDMENVENLELRW 613
K + + W +G G T D + + +TLQ + QK ++ FD + +N+E+RW
Sbjct: 216 KVVVIEASWGLGESVVGGKVTPDEWVVDKQTLQIVDQKIHHKTLAIVFDPKKGKNVEIRW 275
Query: 614 EEN 622
+EN
Sbjct: 276 DEN 278
>sp|Q9XT84|IL2_DELLE Interleukin-2 precursor (IL-2) (T-cell growth factor) (TCGF)
Length = 154
Score = 30.4 bits (67), Expect = 4.8
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 497 NGTPTDSSLENI-RTLQSMLQKCFSVEFDMENVENLEL 607
NG PT SS EN + +QS+LQ + ++ N ENL+L
Sbjct: 19 NGAPTSSSTENTKKQVQSLLQDLHLLLKEINNHENLKL 56
>sp|O97513|IL2_ORCOR Interleukin-2 precursor (IL-2) (T-cell growth factor) (TCGF)
Length = 152
Score = 30.4 bits (67), Expect = 4.8
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 497 NGTPTDSSLENI-RTLQSMLQKCFSVEFDMENVENLEL 607
NG PT SS EN + +QS+LQ + ++ N ENL+L
Sbjct: 19 NGAPTSSSTENTKKQVQSLLQDLQLLLKEINNYENLKL 56
>sp|Q02252|MMSA_HUMAN Methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial precursor (MMSDH) (Malonate-semialdehyde
dehydrogenase [acylating])
Length = 535
Score = 30.0 bits (66), Expect = 6.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 360 LKEVSKNERLDKVCGISIGKIDDKRMILSTLLLIIKLYKWLTKIWTH 220
+ + +K L+++ G + G + M LST +L+ + KWL ++ H
Sbjct: 293 MPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVEH 339
>sp|P19716|FUS_MUMP1 Fusion glycoprotein F0 precursor [Contains: Fusion glycoprotein F2;
Fusion glycoprotein F1]
Length = 538
Score = 29.6 bits (65), Expect = 8.2
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 56 KSLSLKNNEFTEILFPEICYSDIETISRLK--DTKPFEIGHTQNVSFLSINVEIQN--KW 223
++LSL +F+ + I Y++ TIS + +T+P +I + +N +QN K+
Sbjct: 411 QTLSLDGLDFSIVSLSNITYAENLTISLSQTINTQPIDI----STELSKVNASLQNAVKY 466
Query: 224 VHIFVNHLYNLIISNKVDKIILLSSIFPI 310
+ + L ++ +S+K+ II+ + + I
Sbjct: 467 IKESNHQLQSVSVSSKIGAIIVAALVLSI 495
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,970,992
Number of Sequences: 369166
Number of extensions: 1435759
Number of successful extensions: 3884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3882
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)