Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K05
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52758|UK14_HUMAN Ribonuclease UK114 (14.5 kDa translati... 172 3e-43
sp|P80601|UK14_CAPHI Ribonuclease UK114 (14.5 kDa translati... 170 2e-42
sp|P52760|UK14_MOUSE Ribonuclease UK114 (Heat-responsive pr... 168 6e-42
sp|P52759|UK14_RAT Ribonuclease UK114 (14.5 kDa translation... 164 9e-41
sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 ... 139 3e-33
sp|Q9ZKQ6|Y944_HELPJ Hypothetical UPF0076 protein JHP0879 129 4e-30
sp|O25598|Y944_HELPY Hypothetical UPF0076 protein HP0944 126 2e-29
sp|O52178|DFRA_MYXXA Protein dfrA 114 1e-25
sp|P52761|Y709_SYNY3 Hypothetical UPF0076 protein slr0709 114 1e-25
sp|Q9UZA3|Y1251_PYRAB Hypothetical UPF0076 protein PYRAB12510 114 1e-25
>sp|P52758|UK14_HUMAN Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(p14.5) (UK114 antigen homolog)
Length = 137
Score = 172 bits (436), Expect = 3e-43
Identities = 82/133 (61%), Positives = 105/133 (78%)
Frame = +2
Query: 29 MSQILRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALT 208
MS ++R+VI +AK+P AIGPYS A+ VD+TIYISGQ+G+DP+S +LV + + KQAL
Sbjct: 1 MSSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALK 60
Query: 209 NMGNVLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAK 388
NMG +L AA C+F+NVVKTTVLLADINDF +N IY +FK FPARAAYQVA LP ++
Sbjct: 61 NMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSR 120
Query: 389 VEIEAIAVVGDLT 427
+EIEA+A+ G LT
Sbjct: 121 IEIEAVAIQGPLT 133
>sp|P80601|UK14_CAPHI Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(UK114 antigen) (14.3 kDa perchloric acid soluble
protein)
Length = 137
Score = 170 bits (430), Expect = 2e-42
Identities = 82/133 (61%), Positives = 106/133 (79%)
Frame = +2
Query: 29 MSQILRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALT 208
MS ++R++I +AK+P+AIGPYS A+ VD+TIYISGQ+G+DP S +LV + + KQALT
Sbjct: 1 MSSLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALT 60
Query: 209 NMGNVLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAK 388
N+G +L AA C+F+NVVK TVLLADINDF+A+N +Y +F+ FPARAAYQVA LP +
Sbjct: 61 NIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKGGR 120
Query: 389 VEIEAIAVVGDLT 427
VEIEAIAV G LT
Sbjct: 121 VEIEAIAVQGPLT 133
>sp|P52760|UK14_MOUSE Ribonuclease UK114 (Heat-responsive protein 12)
Length = 135
Score = 168 bits (425), Expect = 6e-42
Identities = 83/130 (63%), Positives = 104/130 (80%)
Frame = +2
Query: 29 MSQILRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALT 208
MS I+RKVI + K+P+AIGPYS A+QVD+TIYISGQVG+DP+S +LV + + KQAL
Sbjct: 1 MSSIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALK 60
Query: 209 NMGNVLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAK 388
N+G +L AA C+F+NVVKTTVLLAD+NDF +N IY T+F+ PARAAYQVA LP ++
Sbjct: 61 NLGEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSR 120
Query: 389 VEIEAIAVVG 418
VEIEAIAV G
Sbjct: 121 VEIEAIAVQG 130
>sp|P52759|UK14_RAT Ribonuclease UK114 (14.5 kDa translational inhibitor protein)
(Perchloric acid soluble protein)
Length = 137
Score = 164 bits (415), Expect = 9e-41
Identities = 80/133 (60%), Positives = 104/133 (78%)
Frame = +2
Query: 29 MSQILRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALT 208
MS I+RKVI ++K+P+AIG YS A+ VD+TIY+SGQ+G+DP+S +LV + + KQAL
Sbjct: 1 MSSIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALK 60
Query: 209 NMGNVLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAK 388
N+G +L AA C+F+NVVKTTVLLADINDF +N IY T+F+ PARAAYQVA LP ++
Sbjct: 61 NLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSR 120
Query: 389 VEIEAIAVVGDLT 427
+EIEAIAV G T
Sbjct: 121 IEIEAIAVQGPFT 133
>sp|Q10121|YSD2_CAEEL Hypothetical UPF0076 protein C23G10.2 in chromosome III
Length = 171
Score = 139 bits (350), Expect = 3e-33
Identities = 68/133 (51%), Positives = 94/133 (70%)
Frame = +2
Query: 26 LMSQILRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQAL 205
+ ++ R++I SA +P AIGPYS A++ TIY+SG +G+DP + L +E QT Q+L
Sbjct: 35 MAQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSL 93
Query: 206 TNMGNVLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSA 385
N+G VL AA ++ NVVKTTVLL +I DF A+N +Y +FK P+PARAAYQVA LP
Sbjct: 94 KNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGG 153
Query: 386 KVEIEAIAVVGDL 424
VEIEA+A+ G++
Sbjct: 154 LVEIEAVAIAGEI 166
>sp|Q9ZKQ6|Y944_HELPJ Hypothetical UPF0076 protein JHP0879
Length = 125
Score = 129 bits (323), Expect = 4e-30
Identities = 60/124 (48%), Positives = 89/124 (71%)
Frame = +2
Query: 41 LRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALTNMGN 220
+++VI S +P AIGPYS AI + +++SGQ+G+D ++ + G DI SQT Q++ N+
Sbjct: 1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60
Query: 221 VLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAKVEIE 400
+L A +VVKTT+LL ++DF +NGIY ++FK+P+PARA +QVA+LP A VEIE
Sbjct: 61 ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIE 120
Query: 401 AIAV 412
AIA+
Sbjct: 121 AIAI 124
>sp|O25598|Y944_HELPY Hypothetical UPF0076 protein HP0944
Length = 125
Score = 126 bits (317), Expect = 2e-29
Identities = 59/124 (47%), Positives = 88/124 (70%)
Frame = +2
Query: 41 LRKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALTNMGN 220
+++VI S +P AIGPYS AI + +++SGQ+G+D ++ + G DI SQT Q++ N+
Sbjct: 1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60
Query: 221 VLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAKVEIE 400
+L A +VVKTT+LL ++DF +NGIY ++F +P+PARA +QVA+LP A VEIE
Sbjct: 61 ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIE 120
Query: 401 AIAV 412
AIA+
Sbjct: 121 AIAI 124
>sp|O52178|DFRA_MYXXA Protein dfrA
Length = 131
Score = 114 bits (285), Expect = 1e-25
Identities = 58/130 (44%), Positives = 88/130 (67%), Gaps = 2/130 (1%)
Frame = +2
Query: 29 MSQILRKVICSAKSPSAIGPYSPAIQVD--KTIYISGQVGVDPTSNKLVGDDIESQTKQA 202
M ++ RK I S ++P AIGPYS A+QVD K ++SGQ+ +DP + ++V D+ +Q ++
Sbjct: 1 MRRMARKAIHSDQAPKAIGPYSQAVQVDAGKMTFLSGQIPLDPATMEMVQGDVVAQAERV 60
Query: 203 LTNMGNVLAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLS 382
+ N+ VLAA+ +FS+VV+ T+ L D+ DF +N +Y +F PARA QV+ LP
Sbjct: 61 MENLKAVLAASGLDFSHVVRCTIFLTDLGDFARVNEVYGRYFTGAPPARATVQVSALPRG 120
Query: 383 AKVEIEAIAV 412
+KVEI+AIAV
Sbjct: 121 SKVEIDAIAV 130
>sp|P52761|Y709_SYNY3 Hypothetical UPF0076 protein slr0709
Length = 130
Score = 114 bits (284), Expect = 1e-25
Identities = 56/125 (44%), Positives = 86/125 (68%), Gaps = 2/125 (1%)
Frame = +2
Query: 47 KVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGD-DIESQTKQALTNMGNV 223
K+I +A++P+ +GPY+ AI + ++ +GQ+ +DP + ++G+ ++E Q KQ LTN+G V
Sbjct: 4 KIIQTAQAPAPVGPYNQAIAANGFLFTAGQIALDPQTMTIMGEGNVEVQAKQVLTNLGAV 63
Query: 224 LAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQ-PFPARAAYQVARLPLSAKVEIE 400
L A C + NVVKTTV L D+NDF A+N IY +F + PAR+ +VARLP VEI+
Sbjct: 64 LQEAGCGWENVVKTTVFLKDMNDFAAVNAIYGQYFDEATAPARSCVEVARLPKDVLVEID 123
Query: 401 AIAVV 415
+AV+
Sbjct: 124 CVAVL 128
>sp|Q9UZA3|Y1251_PYRAB Hypothetical UPF0076 protein PYRAB12510
Length = 127
Score = 114 bits (284), Expect = 1e-25
Identities = 54/122 (44%), Positives = 83/122 (68%)
Frame = +2
Query: 44 RKVICSAKSPSAIGPYSPAIQVDKTIYISGQVGVDPTSNKLVGDDIESQTKQALTNMGNV 223
++VI + K+P IGPYS AI+V I+++GQ+ +DP + ++V DI+ QTK+ + N+ +
Sbjct: 3 KEVIFTEKAPKPIGPYSQAIKVGNFIFVAGQIPIDPETGEIVKGDIKEQTKRVIENIKAI 62
Query: 224 LAAANCNFSNVVKTTVLLADINDFTAMNGIYSTFFKQPFPARAAYQVARLPLSAKVEIEA 403
L A + ++VVK TV L D+NDF MN +YS +F + PAR A +V+RLP +E+EA
Sbjct: 63 LEEAGASLNDVVKVTVYLKDLNDFAKMNEVYSEYFGESKPARVAVEVSRLPKDVLIEMEA 122
Query: 404 IA 409
IA
Sbjct: 123 IA 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,055,597
Number of Sequences: 369166
Number of extensions: 999938
Number of successful extensions: 2583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)