Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K03
(320 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01105|SET_HUMAN SET protein (Phosphatase 2A inhibitor I... 74 1e-13
sp|Q9EQU5|SET_MOUSE SET protein (Phosphatase 2A inhibitor I... 74 1e-13
sp|Q63945|SET_RAT SET protein (Phosphatase 2A inhibitor I2P... 74 1e-13
sp|P53997|SET_DROME SET protein 72 3e-13
sp|Q8VD63|TSYL4_MOUSE Testis-specific Y-encoded-like protei... 58 6e-09
sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protei... 56 3e-08
sp|Q9H0U9|TSYL1_HUMAN Testis-specific Y-encoded-like protei... 55 4e-08
sp|O88852|TSYL1_MOUSE Testis-specific Y-encoded-like protei... 55 5e-08
sp|Q9H489|TSY3_HUMAN Testis-specific Y-encoded-like protein... 54 8e-08
sp|Q01534|TSPY1_HUMAN Testis-specific Y-encoded protein 1 45 7e-05
>sp|Q01105|SET_HUMAN SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)
(Template-activating factor I) (TAF-I) (HLA-DR
associated protein II) (PHAPII) (Inhibitor of granzyme
A-activated DNase) (IGAAD)
Length = 290
Score = 73.9 bits (180), Expect = 1e-13
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Frame = +3
Query: 3 KSTNIEWHAGKSLVKVDPK-----NRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDI 167
KST I+W +GK L K + +RKRQ + +SFF WF SD DE+GEVIKDDI
Sbjct: 167 KSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEP-ESFFTWFTDHSDAGADELGEVIKDDI 225
Query: 168 WNNPMQYYLSSDM 206
W NP+QYYL DM
Sbjct: 226 WPNPLQYYLVPDM 238
>sp|Q9EQU5|SET_MOUSE SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)
(Template-activating factor I) (TAF-I)
Length = 289
Score = 73.9 bits (180), Expect = 1e-13
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Frame = +3
Query: 3 KSTNIEWHAGKSLVKVDPK-----NRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDI 167
KST I+W +GK L K + +RKRQ + +SFF WF SD DE+GEVIKDDI
Sbjct: 166 KSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEP-ESFFTWFTDHSDAGADELGEVIKDDI 224
Query: 168 WNNPMQYYLSSDM 206
W NP+QYYL DM
Sbjct: 225 WPNPLQYYLVPDM 237
>sp|Q63945|SET_RAT SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)
(Template-activating factor I) (TAF-I) (Liver
regeneration-related protein LRRGR00002)
Length = 289
Score = 73.9 bits (180), Expect = 1e-13
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Frame = +3
Query: 3 KSTNIEWHAGKSLVKVDPK-----NRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDI 167
KST I+W +GK L K + +RKRQ + +SFF WF SD DE+GEVIKDDI
Sbjct: 166 KSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEP-ESFFTWFTDHSDAGADELGEVIKDDI 224
Query: 168 WNNPMQYYLSSDM 206
W NP+QYYL DM
Sbjct: 225 WPNPLQYYLVPDM 237
>sp|P53997|SET_DROME SET protein
Length = 269
Score = 72.4 bits (176), Expect = 3e-13
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Frame = +3
Query: 6 STNIEWHAGKSLVKV---DPKNRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNN 176
ST I+W GK+L+K+ P K++ + +FF+WF ++D +NDEI E+IKDD+W N
Sbjct: 162 STPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFSDNTDPVNDEIAELIKDDLWPN 221
Query: 177 PMQYYLSSDM 206
P+QYYL D+
Sbjct: 222 PLQYYLVPDI 231
>sp|Q8VD63|TSYL4_MOUSE Testis-specific Y-encoded-like protein 4 (TSPY-like 4)
Length = 406
Score = 58.2 bits (139), Expect = 6e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +3
Query: 6 STNIEWHAGKSLVKVDPKNRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNNPMQ 185
ST I WH G+ +NR+ + SFFNWF S + D I E+IK ++W+NP+Q
Sbjct: 319 STPIRWHRGQEPQAHIHRNREGNT---IPSFFNWFSDHSLLEFDRIAEIIKGELWSNPLQ 375
Query: 186 YYLSSD 203
YYL D
Sbjct: 376 YYLMGD 381
>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 (TSPY-like 4)
Length = 414
Score = 55.8 bits (133), Expect = 3e-08
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +3
Query: 6 STNIEWHAGKSLVKVDPK---NRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNN 176
ST I WH G+ DP+ +R R+ + SFFNWF S + D I E+IK ++W N
Sbjct: 327 STPIRWHRGQ-----DPQAHIHRNREGNT-IPSFFNWFSDHSLLEFDRIAEIIKGELWPN 380
Query: 177 PMQYYLSSD 203
P+QYYL +
Sbjct: 381 PLQYYLMGE 389
>sp|Q9H0U9|TSYL1_HUMAN Testis-specific Y-encoded-like protein 1 (TSPY-like 1)
Length = 438
Score = 55.5 bits (132), Expect = 4e-08
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 6 STNIEWHAGKSLVKVDPKNRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNNPMQ 185
ST I W G +P++ R+ Q ++ SFF WF S +D+I E+IK+D+W NP+Q
Sbjct: 353 STPIIWRRGH-----EPQSFIRRNQDLICSFFTWFSDHSLPESDKIAEIIKEDLWPNPLQ 407
Query: 186 YYL 194
YYL
Sbjct: 408 YYL 410
>sp|O88852|TSYL1_MOUSE Testis-specific Y-encoded-like protein 1 (TSPY-like 1)
Length = 379
Score = 55.1 bits (131), Expect = 5e-08
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +3
Query: 6 STNIEWHAGKSLVKVDPKNRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNNPMQ 185
ST I W G +P++ R+ Q ++ SFF WF S +D I E+IK+D+W NP+Q
Sbjct: 294 STPIIWRRGH-----EPQSFIRRNQDLICSFFTWFSDHSLPESDRIAEIIKEDLWPNPLQ 348
Query: 186 YYL 194
YYL
Sbjct: 349 YYL 351
>sp|Q9H489|TSY3_HUMAN Testis-specific Y-encoded-like protein 3 (TSPY-like 3)
Length = 355
Score = 54.3 bits (129), Expect = 8e-08
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +3
Query: 6 STNIEWHAGKSLVKVDPKNRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNNPMQ 185
+T I WH G+ + +NR + SFF+WF S D + ++IKDD+W NP+Q
Sbjct: 269 ATRIRWHWGQEPPALVHRNRDT-----VRSFFSWFSQHSLPEADRVAQIIKDDLWPNPLQ 323
Query: 186 YYLSSD 203
YYL D
Sbjct: 324 YYLLGD 329
>sp|Q01534|TSPY1_HUMAN Testis-specific Y-encoded protein 1
Length = 308
Score = 44.7 bits (104), Expect = 7e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 6 STNIEWHAGKSLVKVDPKNRKRQAQAMLDSFFNWFEGSSDMLNDEIGEVIKDDIWNNPMQ 185
ST IEW+ +V+ R+ ++ +FFNWF + +++I E++ D+W NP+Q
Sbjct: 232 STPIEWYPD---YEVEAYRRRHHNSSL--NFFNWFSDHNFAGSNKIAEILCKDLWRNPLQ 286
Query: 186 YY 191
YY
Sbjct: 287 YY 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,628,240
Number of Sequences: 369166
Number of extensions: 340461
Number of successful extensions: 1023
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)