Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J23
(506 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8MHZ9|CL46_BOVIN Collectin-46 precursor (CL-46) (46 kDa... 58 1e-08
sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminoge... 58 1e-08
sp|P43025|TETN_MOUSE TETRANECTIN preCURSOR (TN) (PLASMINOGE... 58 1e-08
sp|P26258|TETN_CARSP Tetranectin-like protein 55 9e-08
sp|Q28008|CLC3A_BOVIN C-type lectin domain family 3 member ... 54 2e-07
sp|P42916|CL43_BOVIN Collectin-43 precursor (CL-43) (43 kDa... 53 5e-07
sp|O75596|CLC3A_HUMAN C-type lectin domain family 3 member ... 50 2e-06
sp|P23805|CONG_BOVIN Conglutinin precursor 49 9e-06
sp|Q9EPW4|CLC3A_MOUSE C-type lectin domain family 3 member ... 48 1e-05
sp|Q66KU1|CLC3A_XENLA C-type lectin domain family 3 member ... 47 2e-05
>sp|Q8MHZ9|CL46_BOVIN Collectin-46 precursor (CL-46) (46 kDa collectin)
Length = 371
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = +2
Query: 116 TYNEALQFCRTRGTQLARVNSASDNQAVASFAKRVVADYYWIDANDYTEEGKWVDSNGKE 295
+Y++A Q CR QLA SA++N+AVA + D + + ND + EGK+ G+
Sbjct: 267 SYSDAQQLCREAKGQLASPRSAAENEAVAQLVRAKNNDAF-LSMNDISTEGKFTYPTGES 325
Query: 296 KPYKNWAAHEPNGNRA 343
Y NWA+ EPN N A
Sbjct: 326 LVYSNWASGEPNNNNA 341
>sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminogen-kringle 4 binding protein)
Length = 202
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = +2
Query: 74 EVDSEKMIVSTDRYTYNEALQFCRTRGTQLARVNSASDNQAVASFAKRVVADY--YWIDA 247
+V + + T T++EA + C +RG L+ + S+N A+ + ++ V + W+
Sbjct: 76 KVHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGL 135
Query: 248 NDYTEEGKWVDSNGKEKPYKNWAAH---EPNGNRAEN 349
ND EG WVD G YKNW +P+G + EN
Sbjct: 136 NDMAAEGTWVDMTGARIAYKNWETEITAQPDGGKTEN 172
>sp|P43025|TETN_MOUSE TETRANECTIN preCURSOR (TN) (PLASMINOGEN-KRINGLE 4 BINDING PROTEIN)
Length = 202
Score = 57.8 bits (138), Expect = 1e-08
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Frame = +2
Query: 74 EVDSEKMIVSTDRYTYNEALQFCRTRGTQLARVNSASDNQAVASFAKRVVAD--YYWIDA 247
+V+ + ++ T T++EA + C ++G L S +N+A+ +A+ V + W+
Sbjct: 76 KVNLKCLLAFTQPKTFHEASEDCISQGGTLGTPQSELENEALFEYARHSVGNDANIWLGL 135
Query: 248 NDYTEEGKWVDSNGKEKPYKNWAAH---EPNGNRAEN 349
ND EG WVD G YKNW +P+G +AEN
Sbjct: 136 NDMAAEGAWVDMTGGLLAYKNWETEITTQPDGGKAEN 172
>sp|P26258|TETN_CARSP Tetranectin-like protein
Length = 166
Score = 55.1 bits (131), Expect = 9e-08
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +2
Query: 95 IVSTDRYTYNEALQFCRTRGTQLARVNSASDNQAVASFAKR--VVADYYWIDANDYTEEG 268
+ S +Y+ A + C +G L+ S+ + ++ S+AK+ V A +WI ND T EG
Sbjct: 49 LASRGSKSYHAANEDCIAQGGTLSIPRSSDEGNSLRSYAKKSLVGARDFWIGVNDMTTEG 108
Query: 269 KWVDSNGKEKPYKNWAAHEPNGNRAEN 349
K+VD NG Y NW +P G EN
Sbjct: 109 KFVDVNGLPITYFNWDRSKPVGGTREN 135
>sp|Q28008|CLC3A_BOVIN C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 197
Score = 53.9 bits (128), Expect = 2e-07
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 119 YNEALQFCRTRGTQLARVNSASDNQAVASFAKRVV--ADYYWIDANDYTEEGKWVDSNGK 292
++EA + C ++G L SA + A+ + KR + + +W+ ND EGK+VD NG
Sbjct: 88 FHEANEDCISKGGTLVVPRSADEINALRDYGKRSLPGVNDFWLGINDMVAEGKFVDINGL 147
Query: 293 EKPYKNWAAHEPNGNRAEN 349
+ NW +PNG + EN
Sbjct: 148 AISFLNWDQAQPNGGKREN 166
>sp|P42916|CL43_BOVIN Collectin-43 precursor (CL-43) (43 kDa collectin)
Length = 321
Score = 52.8 bits (125), Expect = 5e-07
Identities = 29/78 (37%), Positives = 44/78 (56%)
Frame = +2
Query: 116 TYNEALQFCRTRGTQLARVNSASDNQAVASFAKRVVADYYWIDANDYTEEGKWVDSNGKE 295
+Y++A Q CR QLA S+++N+AV R + ++ ND ++EGK+ G
Sbjct: 216 SYSDAEQLCREAKGQLASPRSSAENEAVTQLV-RAKNKHAYLSMNDISKEGKFTYPTGGS 274
Query: 296 KPYKNWAAHEPNGNRAEN 349
Y NWA EPN NRA++
Sbjct: 275 LDYSNWAPGEPN-NRAKD 291
>sp|O75596|CLC3A_HUMAN C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 197
Score = 50.4 bits (119), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 119 YNEALQFCRTRGTQLARVNSASDNQAVASFAKRVV--ADYYWIDANDYTEEGKWVDSNGK 292
++EA + C ++G L ++ + A+ + KR + + +W+ ND EGK+VD NG
Sbjct: 88 FHEANEDCISKGGILVIPRNSDEINALQDYGKRSLPGVNDFWLGINDMVTEGKFVDVNGI 147
Query: 293 EKPYKNWAAHEPNGNRAEN 349
+ NW +PNG + EN
Sbjct: 148 AISFLNWDRAQPNGGKREN 166
>sp|P23805|CONG_BOVIN Conglutinin precursor
Length = 371
Score = 48.5 bits (114), Expect = 9e-06
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +2
Query: 116 TYNEALQFCRTRGTQLARVNSASDNQAVASFAKRVVADYYWIDANDYTEEGKWVDSNGKE 295
+Y++A Q CR QLA S+++N+AV + + Y + ND + EG++ G+
Sbjct: 267 SYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAY-LSMNDISTEGRFTYPTGEI 325
Query: 296 KPYKNWAAHEPNGN 337
Y NWA EPN +
Sbjct: 326 LVYSNWADGEPNNS 339
>sp|Q9EPW4|CLC3A_MOUSE C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 196
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 119 YNEALQFCRTRGTQLARVNSASDNQAVASFAKRVV--ADYYWIDANDYTEEGKWVDSNGK 292
Y+EA + C ++G L ++ + A+ + KR + + +W+ ND EGK++D +G
Sbjct: 88 YHEANEDCISKGGTLVVPRNSDEINALRDYGKRSLPGVNDFWLGINDMVTEGKFLDVHGF 147
Query: 293 EKPYKNWAAHEPNGNRAEN 349
+ NW +P+G + EN
Sbjct: 148 AVSFLNWDRAQPSGGKREN 166
>sp|Q66KU1|CLC3A_XENLA C-type lectin domain family 3 member A homolog precursor (C-type
lectin superfamily member 1 homolog)
Length = 193
Score = 47.4 bits (111), Expect = 2e-05
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 119 YNEALQFCRTRGTQLARVNSASDNQAVASFAKRVV--ADYYWIDANDYTEEGKWVDSNGK 292
++EA + C +G LA + +N A+ + K+ + + +W+ ND EGK+VD NG
Sbjct: 86 FHEANEDCIAKGGTLAIPRDSEENNALRDYGKKSLHGSGEFWLGINDMVNEGKFVDVNGV 145
Query: 293 EKPYKNWAAHEPNGNRAEN 349
Y NW P G + +N
Sbjct: 146 AITYFNW-ERIPKGGKRKN 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,525,373
Number of Sequences: 369166
Number of extensions: 1065165
Number of successful extensions: 2827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)