Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J22
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q98KH9|TYSY_RHILO Thymidylate synthase (TS) (TSase) 30 2.2
sp|P43322|NRG1_RAT Pro-neuregulin-1, membrane-bound isoform... 28 5.0
sp|O82804|ELF3_ARATH EARLY FLOWERING 3 protein (Nematode-re... 28 6.5
sp|Q98936|PTPRG_CHICK Receptor-type tyrosine-protein phosph... 28 6.5
sp|O94759|TRPM2_HUMAN Transient receptor potential cation c... 28 8.5
sp|Q8TEK3|DOT1L_HUMAN Histone-lysine N-methyltransferase, H... 28 8.5
>sp|Q98KH9|TYSY_RHILO Thymidylate synthase (TS) (TSase)
Length = 264
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 52 WFPAVCARQKYLGDEGGTAVPQKADRNGDSQPNSSRHAKS 171
WF A KYL D G T + AD NGD P R +S
Sbjct: 61 WFLAGDTNIKYLTDHGVTIWDEWADENGDLGPVYGRQWRS 100
>sp|P43322|NRG1_RAT Pro-neuregulin-1, membrane-bound isoform precursor (Pro-NRG1)
[Contains: Neuregulin-1 (Neu differentiation factor)
(Heregulin) (HRG) (Acetylcholine receptor-inducing
activity) (ARIA) (Sensory and motor neuron-derived
factor) (Glial growth factor)]
Length = 662
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 160 VWRNSVENHRFDRPSGGPPFRLH 92
+ +SVEN R P+GGP RLH
Sbjct: 394 IMMSSVENSRHSSPAGGPRGRLH 416
>sp|O82804|ELF3_ARATH EARLY FLOWERING 3 protein (Nematode-responsive protein)
Length = 695
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 17 ARSNEEEPTVEDG--SQPCALDRNISVMKAERRSPRRPIETVI 139
+RSN V G SQPC ++RN+SV + + + E +
Sbjct: 57 SRSNNTSTLVHPGPSSQPCGVERNLSVQHLDSSAANQATEKFV 99
>sp|Q98936|PTPRG_CHICK Receptor-type tyrosine-protein phosphatase gamma precursor
(Protein-tyrosine phosphatase gamma) (R-PTP-gamma)
Length = 1422
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 41 TVEDGSQPCALDRNISVMKAERRSPRRPIETVI 139
T E+G+ P LD+N +VM ++ P +E+++
Sbjct: 1390 TKENGNGPMTLDKNGAVMASDESDPAESMESLV 1422
>sp|O94759|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2
(Long transient receptor potential channel 2) (LTrpC2)
(LTrpC-2) (Transient receptor potential channel 7)
(TrpC7) (Estrogen-responsive element associated gene
protein 1)
Length = 1503
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 184 EIINQIWRVWRNSVENHRFDRPSGGPPF-RLHHRDISVERTRLGT 53
E +QIW+ R+ + RP+ PPF L H + ++R L T
Sbjct: 1057 EHTDQIWKFQRHDLIEEYHGRPAAPPPFILLSHLQLFIKRVVLKT 1101
>sp|Q8TEK3|DOT1L_HUMAN Histone-lysine N-methyltransferase, H3 lysine-79 specific (Histone
H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like
protein)
Length = 1739
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 23 SNEEEPTVEDGSQPCALDRNISVMKAERRSPRRPIE 130
+++EEP ED ++R I+ + E +SP + +E
Sbjct: 1184 TSDEEPGSEDEPSSARIERKIATISLESKSPPKTLE 1219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,869,491
Number of Sequences: 369166
Number of extensions: 539054
Number of successful extensions: 1389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)