Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J17
(790 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04323|U33K_HUMAN UBA/UBX 33.3 kDa protein 71 4e-12
sp|Q922Y1|U33K_MOUSE UBA/UBX 33.3 kDa protein 71 4e-12
sp|Q8VCH8|UBXD2_MOUSE UBX domain-containing protein 2 69 2e-11
sp|Q92575|UBXD2_HUMAN UBX domain-containing protein 2 67 6e-11
sp|Q10483|YDFB_SCHPO Hypothetical protein C17C9.11c in chro... 48 3e-05
sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT5... 44 4e-04
sp|P22793|TRHY_SHEEP Trichohyalin 43 0.001
sp|Q7TNY6|GCP60_RAT Golgi resident protein GCP60 (Acyl-CoA-... 40 0.006
sp|Q9UPA5|BSN_HUMAN Bassoon protein (Zinc-finger protein 231) 40 0.006
sp|P93788|REMO_SOLTU Remorin (pp34) 40 0.010
>sp|Q04323|U33K_HUMAN UBA/UBX 33.3 kDa protein
Length = 297
Score = 70.9 bits (172), Expect = 4e-12
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Frame = +3
Query: 15 GLQAALDWLISHK--PDVPQE----------NLPSSSVEECELEDSDNKEGDKMVPLAKS 158
G++AA+DWL+ H+ PDV + P+SS E+ LE S + G+ L++
Sbjct: 31 GIEAAMDWLMEHEDDPDVDEPLETPLGHILGREPTSS-EQGGLEGSGSAAGEGKPALSEE 89
Query: 159 MKCDDCGKLLPKESDVQFHATKFGHLNFSESLEEIKPLTXXXXXXXXXXXXXXXXXXRVE 338
+ + ++L + Q E
Sbjct: 90 ERQEQTKRMLELVAQKQR-----------------------------------------E 108
Query: 339 REAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKNQI 518
RE E +E+LERER RR+QG+ + A+ + +EDE++R AE++RREK E+ R++++ +I
Sbjct: 109 REEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVREKI 168
Query: 519 ALDRETRKKKF 551
D+ R KK+
Sbjct: 169 ERDKAERAKKY 179
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 556 PYPPKEIPIVNPPSEIEAPVRNFDSCKIQVRHSQGASIVETFSPNDSLFKVALWFSQKTG 735
P P+ P+ + PS+ R +D C+IQVR G S+ +TF + L V L+ G
Sbjct: 189 PVAPEPGPVPSSPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRG 248
>sp|Q922Y1|U33K_MOUSE UBA/UBX 33.3 kDa protein
Length = 297
Score = 70.9 bits (172), Expect = 4e-12
Identities = 34/81 (41%), Positives = 55/81 (67%)
Frame = +3
Query: 336 EREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKNQ 515
ERE E +E+LERE+ RR+QG+ + A+ K +EDE++R AE++RREK E+ R++++ +
Sbjct: 108 EREEREEREALEREKQRRRQGQELSVARQKLQEDEMRRAAEERRREKAEELAARQRVREK 167
Query: 516 IALDRETRKKKFPAISAKRNS 578
I D+ R KK+ R+S
Sbjct: 168 IERDKAERAKKYGGSVGSRSS 188
Score = 38.5 bits (88), Expect = 0.021
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 577 PIVNPPSEIEAPVRNFDSCKIQVRHSQGASIVETFSPNDSLFKVALWFSQKTG 735
P+ + PS+ R +D C+IQVR G S+ +TF + L V L+ G
Sbjct: 196 PVPSSPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRG 248
>sp|Q8VCH8|UBXD2_MOUSE UBX domain-containing protein 2
Length = 506
Score = 68.6 bits (166), Expect = 2e-11
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLK 509
R E+ EA+ +++E RR+ GK ++D K K EE+ KR+ E++ REK EDR RE++K
Sbjct: 209 REEKRKEEAQREIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERSREKAEDRAARERIK 268
Query: 510 NQIALDRETRKKKF 551
QIALDR R +F
Sbjct: 269 QQIALDRAERAARF 282
>sp|Q92575|UBXD2_HUMAN UBX domain-containing protein 2
Length = 508
Score = 67.0 bits (162), Expect = 6e-11
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLK 509
R E+ E + +++E RR+ GK ++D K K EE+ KR+ E++ REK EDR RE++K
Sbjct: 210 REEKRKEEEQREIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIK 269
Query: 510 NQIALDRETRKKKF 551
QIALDR R +F
Sbjct: 270 QQIALDRAERAARF 283
>sp|Q10483|YDFB_SCHPO Hypothetical protein C17C9.11c in chromosome I
Length = 240
Score = 48.1 bits (113), Expect = 3e-05
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Frame = +3
Query: 159 MKCDDCGKLLPKESDVQFHATKFGHLNFSESLEEIKPLTXXXXXXXXXXXXXXXXXXRVE 338
+KC +C KLL +FH+TK H F E+ EEIK +
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSHDQFEETEEEIKKRSPEEL----------------- 45
Query: 339 REAFEAKESLERERYRRQQGKTIIDAKTKYE--EDELKRLAEQKRREKEEDRLY-REKLK 509
++A EA +E+ +++ + + KT Y+ + A+ R+ +++ RL +K++
Sbjct: 46 KQAIEALREKAKEKKEKERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIR 105
Query: 510 NQIALDRETRKK 545
Q A D E RKK
Sbjct: 106 QQKAEDAEQRKK 117
>sp|P53935|YNJ1_YEAST Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic region
Length = 1240
Score = 44.3 bits (103), Expect = 4e-04
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQ-QGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKL 506
R E + KE ERE RR+ Q K + +AK K +E+ +RL EQ+RRE+ +++ + K
Sbjct: 670 REEEKERLKKELEEREMRRREAQRKKVEEAKRKKDEERKRRLEEQQRREEMQEK--QRKQ 727
Query: 507 KNQIALDRETRKKK 548
K ++ RE KK+
Sbjct: 728 KEELKRKREEEKKR 741
Score = 38.5 bits (88), Expect = 0.021
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Frame = +3
Query: 351 EAKESLERERYRR---QQGKTIIDAKTKYEEDELKRLAEQ-KRREKEEDRLYREKLKNQI 518
EAK + ER RR QQ + + K + +++ELKR E+ K+R +E+ RL +EKL+ +
Sbjct: 698 EAKRKKDEERKRRLEEQQRREEMQEKQRKQKEELKRKREEEKKRIREQKRLEQEKLQKEK 757
Query: 519 ALDRETRKKKFPAISAKRNSDCQSS 593
+ R A+ ++ ++ Q+S
Sbjct: 758 EEEERQRLIAEDALRKQKLNEEQTS 782
Score = 33.1 bits (74), Expect = 0.89
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Frame = +3
Query: 360 ESLERERYRRQQGKTIIDAKTKYEEDELKRLA------EQKRREKEEDRLYREKLKNQIA 521
+ LE E+ R+++ K K + +E E KRL E+++RE+E++RL +E L+ +
Sbjct: 629 QELEEEK-RKKREKEEKKQKKREKEKEKKRLQQLAKEEEKRKREEEKERLKKE-LEEREM 686
Query: 522 LDRETRKKKFPAISAKRNSD 581
RE ++KK AKR D
Sbjct: 687 RRREAQRKKVE--EAKRKKD 704
>sp|P22793|TRHY_SHEEP Trichohyalin
Length = 1549
Score = 42.7 bits (99), Expect = 0.001
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRR-EKEEDRLYREKL 506
+VE + E + ERE+ R+++ K ++ EE++L+R QKRR E+E+ L + +L
Sbjct: 539 KVELQEEEQLQRQEREKRRQEREKQYLEKVELQEEEQLQRQERQKRRQEREKQYLEKVEL 598
Query: 507 KNQIALDRETRKKK 548
+ + L R+ R+K+
Sbjct: 599 QEEEQLQRQEREKR 612
Score = 40.4 bits (93), Expect = 0.006
Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRR-EKEEDRLYREKL 506
R++RE + + +R R+++ K ++ +EE++L+R +KRR E+E+ L + +L
Sbjct: 427 RLQREEEQLQREEREKRRRQEREKQYLEKVELWEEEQLQREEREKRRQEREKQYLEKVEL 486
Query: 507 KNQIALDRETRKKK 548
+ + L R+ R+K+
Sbjct: 487 REEEQLQRQEREKR 500
Score = 40.0 bits (92), Expect = 0.007
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREK-- 503
+VE E + ERE+ R+++ K ++ EE++L+R +KRR+ E +R Y EK
Sbjct: 455 KVELWEEEQLQREEREKRRQEREKQYLEKVELREEEQLQRQEREKRRQ-ERERQYLEKVE 513
Query: 504 LKNQIALDRETRKKK 548
L+ + L RE R+K+
Sbjct: 514 LQEEEQLQREEREKR 528
Score = 40.0 bits (92), Expect = 0.007
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRR-EKEEDRLYREKL 506
+VE + E + ERE+ R+++ + ++ EE++L+R +KRR E+E+ L + +L
Sbjct: 511 KVELQEEEQLQREEREKRRQERERQYLEKVELQEEEQLQRQEREKRRQEREKQYLEKVEL 570
Query: 507 KNQIALDRETRKKK 548
+ + L R+ R+K+
Sbjct: 571 QEEEQLQRQERQKR 584
Score = 39.3 bits (90), Expect = 0.012
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQ-------KRREKEEDR 488
R E + +E L+RE+ R+++ + + + + EE+ L+R EQ KRR +E ++
Sbjct: 391 REEEQLRLKEEKLQREKRRQERERQYREVELQREEERLQREEEQLQREEREKRRRQEREK 450
Query: 489 LYREKLK--NQIALDRETRKKK 548
Y EK++ + L RE R+K+
Sbjct: 451 QYLEKVELWEEEQLQREEREKR 472
Score = 39.3 bits (90), Expect = 0.012
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREK-- 503
+VE E + ERE+ R+++ + ++ EE++L+R +KRR+ E +R Y EK
Sbjct: 483 KVELREEEQLQRQEREKRRQERERQYLEKVELQEEEQLQREEREKRRQ-ERERQYLEKVE 541
Query: 504 LKNQIALDRETRKKK 548
L+ + L R+ R+K+
Sbjct: 542 LQEEEQLQRQEREKR 556
Score = 39.3 bits (90), Expect = 0.012
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREK-- 503
+VE + E + ER++ R+++ K ++ EE++L+R +KRR+ E +R Y EK
Sbjct: 567 KVELQEEEQLQRQERQKRRQEREKQYLEKVELQEEEQLQRQEREKRRQ-ERERQYLEKVE 625
Query: 504 LKNQIALDRETRKKK 548
L+ + + R+ R+K+
Sbjct: 626 LQEEEQVQRQEREKR 640
Score = 38.9 bits (89), Expect = 0.016
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 348 FEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKNQIALD 527
F A++ LERE+ + + + D K + EE LK E+K R EEDR +RE+ + L+
Sbjct: 920 FPAEQLLEREQQKETERR---DRKFREEEQLLKGQREEKIRYLEEDRKFREEEQQLRRLE 976
Query: 528 RETRKKK 548
RE + ++
Sbjct: 977 REQQLRQ 983
Score = 36.6 bits (83), Expect = 0.081
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREK-- 503
+VE + E + ERE+ R+++ + ++ EE++++R +KRR+ E +R Y EK
Sbjct: 595 KVELQEEEQLQRQEREKRRQERERQYLEKVELQEEEQVQRQEREKRRQ-ERERQYLEKEL 653
Query: 504 ------LKNQIALDRETRKKK 548
L+ + L RE R+K+
Sbjct: 654 QRQEERLQEEEQLLREEREKR 674
Score = 35.8 bits (81), Expect = 0.14
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDEL-------KRLAEQKRREKEEDR 488
+VE + E + ERE+ R+++ + ++ + + +E+ L + E++R+E+E
Sbjct: 623 KVELQEEEQVQRQEREKRRQERERQYLEKELQRQEERLQEEEQLLREEREKRRQERERQY 682
Query: 489 LYREKLKNQIALDRETRKKK 548
L + +L+ + L RE R+K+
Sbjct: 683 LEKVELQEEEQLQREEREKR 702
Score = 35.8 bits (81), Expect = 0.14
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +3
Query: 336 EREAFEAKESL---ERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKL 506
+ E + +E L ERE+ R+++ + ++ EE++L+R +KRR +E +R Y EK
Sbjct: 656 QEERLQEEEQLLREEREKRRQERERQYLEKVELQEEEQLQREEREKRR-QERERQYLEKE 714
Query: 507 KNQIALDRETRKKK 548
+ Q +R R+K+
Sbjct: 715 ELQRQEERLQREKE 728
Score = 35.8 bits (81), Expect = 0.14
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 336 EREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKL--K 509
E+ + K L+RE + Q+ K + + +Y E+EL L E++R ++E +L RE+ +
Sbjct: 770 EKRQYLEKVELQREEEQLQREKRRQERERQYREEEL--LREEERLHRKEQQLQREECEKR 827
Query: 510 NQIALDRETRKKKFPAISAKR 572
+ L+R+ +++ + KR
Sbjct: 828 RRQELERQLEEEELQRLDRKR 848
Score = 35.0 bits (79), Expect = 0.23
Identities = 20/66 (30%), Positives = 39/66 (59%)
Frame = +3
Query: 336 EREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKNQ 515
+RE +E L + + Q+ K + + +Y E EL+R E++R ++EE++L RE+ + +
Sbjct: 386 QREQVREEEQLRLKEEKLQREKRRQERERQYREVELQR--EEERLQREEEQLQREEREKR 443
Query: 516 IALDRE 533
+RE
Sbjct: 444 RRQERE 449
Score = 35.0 bits (79), Expect = 0.23
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Frame = +3
Query: 330 RVEREA-FEAKESL--ERERYRRQQGKTIIDAKTK---YEEDELKRLAEQKRREKEEDRL 491
R ER+ F +E L ERE+ RRQ+ + + + +EE++L + E++ R +E DR
Sbjct: 1194 RQERDRKFREEEQLLQEREKLRRQEREPQLRQERDRKFHEEEQLLQEREEQLRRQERDRK 1253
Query: 492 YREKL----KNQIALDRETRKKKF 551
+RE+ + + L R+ R +KF
Sbjct: 1254 FREEAQLLQEREEQLRRQERDRKF 1277
Score = 34.3 bits (77), Expect = 0.40
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRR------EKEEDRL 491
R +R ++ LE+E +RQ+ + + + ED KR ++R+ ++EEDRL
Sbjct: 699 REKRRQERERQYLEKEELQRQEERLQREKEQLQREDREKRRQVRERKYLEEELQQEEDRL 758
Query: 492 YREKLKNQIALDRETRKKK 548
REK L RE R+K+
Sbjct: 759 QREK-----QLLREDREKR 772
Score = 34.3 bits (77), Expect = 0.40
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +3
Query: 357 KESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKNQI---ALD 527
+E L+RE+ R+++ + + + EE+ L R +Q +RE+ E R R++L+ Q+ L
Sbjct: 784 EEQLQREKRRQERERQYREEELLREEERLHRKEQQLQREECEKRR-RQELERQLEEEELQ 842
Query: 528 RETRKKKF 551
R RK++F
Sbjct: 843 RLDRKRQF 850
Score = 33.9 bits (76), Expect = 0.52
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +3
Query: 330 RVEREAFEAKESLERER---YRRQQGKTIIDAKTK---YEEDELKRLAEQKRREKEEDRL 491
R ER +E L RER R Q+G+ + K +EE++L + E++ R +E DR
Sbjct: 1088 RQERNRKFREEQLLREREEQLRLQEGEPQLRQKRDRKFHEEEQLLQEREEQLRRQERDRK 1147
Query: 492 YREKL----KNQIALDRETRKKKF 551
+RE+ + + L R+ R +KF
Sbjct: 1148 FREEAQILKEREEQLRRQERDRKF 1171
Score = 33.5 bits (75), Expect = 0.68
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 330 RVEREA-FEAKESL--ERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYRE 500
R ER+ F +E L ERE R+Q + D K + EE L+ EQ RR+ E DR +RE
Sbjct: 1018 RQERDRKFREEEQLLQEREEQLRRQER---DRKFREEEQLLQEREEQLRRQ-ERDRKFRE 1073
Query: 501 KLKNQIALDRETRKKK 548
+ + L+RE + ++
Sbjct: 1074 EEQQLRLLEREQQLRQ 1089
Score = 33.1 bits (74), Expect = 0.89
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = +3
Query: 330 RVEREA-FEAKESL--ERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYRE 500
R ER+ F +E L ERE R+Q + D K + EE L+ EQ RR+ E DR +RE
Sbjct: 1270 RQERDRKFREEEQLLQEREEQLRRQER---DRKFREEEQLLQEREEQLRRQ-ERDRKFRE 1325
Query: 501 K----LKNQIALDRETRKKKF 551
+ +++ L R+ R +KF
Sbjct: 1326 EEQLLKESEEQLRRQERDRKF 1346
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Frame = +3
Query: 336 EREAFEAKESLERERYRRQQGKTIIDAKTKYE---EDELKRLAEQKRR-EKEEDRLYR-- 497
+ E E E +R +RQ+ + ++ + + E+E +R+ EQ R+ ++E++L+R
Sbjct: 1372 QEEQLRRAEQEEEQRRQRQRDRKFLEEEQSLQREREEEKRRVQEQDRKFLEQEEQLHREE 1431
Query: 498 -EKLKNQIALDRETRKKKFPAISAKR 572
E+L+ + LD++ R ++ A KR
Sbjct: 1432 QEELRRRQQLDQQYRAEEQFAREEKR 1457
Score = 32.3 bits (72), Expect = 1.5
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 351 EAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREK----LKNQI 518
EA+ ERE R+Q + D K + EE L+ EQ RR+ E DR +RE+ + +
Sbjct: 1257 EAQLLQEREEQLRRQER---DRKFREEEQLLQEREEQLRRQ-ERDRKFREEEQLLQEREE 1312
Query: 519 ALDRETRKKKF 551
L R+ R +KF
Sbjct: 1313 QLRRQERDRKF 1323
Score = 32.0 bits (71), Expect = 2.0
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 351 EAKESLERER---YRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREK----LK 509
E ++ L +ER +R + + D K + EE L+ EQ RR+ E DR +RE+ +
Sbjct: 976 EREQQLRQERDRKFREELSRQERDRKFREEEQLLQEREEQLRRQ-ERDRKFREEEQLLQE 1034
Query: 510 NQIALDRETRKKKF 551
+ L R+ R +KF
Sbjct: 1035 REEQLRRQERDRKF 1048
Score = 30.0 bits (66), Expect = 7.5
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQG------KTIIDAKTKYEEDELKRLAEQKRREKEEDRL 491
R ER+ ++ L+ E+ +RQ+G + + K + +E + +RL E+++ +K++ R
Sbjct: 189 RFERQEQRERQRLQVEQQQRQRGELRERQEEVQLQKRETQELQRERLEEEQQLQKQK-RG 247
Query: 492 YREKLKNQIALDRETRKKK 548
E+L Q ++E R+K+
Sbjct: 248 LEERLLEQERREQELRRKE 266
>sp|Q7TNY6|GCP60_RAT Golgi resident protein GCP60 (Acyl-CoA-binding domain-containing
protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi
complex-associated protein 1) (GOCAP1) (DMT1-associated
protein) (DAP)
Length = 526
Score = 40.4 bits (93), Expect = 0.006
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Frame = +3
Query: 330 RVEREAFEAKESLERERYRRQQGKTII----DAKTKYEEDELKRLAEQKRREKEEDRLYR 497
R+E+E E + E ER +R++ + + K K EE++ R E++RR EE+RL
Sbjct: 177 RIEKEEEEKRRKAEEERRQREEEERERLQKEEEKRKREEEDRLRREEEERRRIEEERLRL 236
Query: 498 EKLKNQI--ALDRET 536
E+ K QI AL+ +T
Sbjct: 237 EQQKQQIMAALNSQT 251
>sp|Q9UPA5|BSN_HUMAN Bassoon protein (Zinc-finger protein 231)
Length = 3926
Score = 40.4 bits (93), Expect = 0.006
Identities = 20/70 (28%), Positives = 41/70 (58%)
Frame = +3
Query: 333 VEREAFEAKESLERERYRRQQGKTIIDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKN 512
+ R FE +E+ + ER R+QQ + + + + E ++L++L Q+ E+E L R + +
Sbjct: 2349 LSRPGFEKEEASQEERQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEE 2408
Query: 513 QIALDRETRK 542
Q+ + RE ++
Sbjct: 2409 QLLVQRELQE 2418
>sp|P93788|REMO_SOLTU Remorin (pp34)
Length = 198
Score = 39.7 bits (91), Expect = 0.010
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +3
Query: 342 EAFEAKESLERERYRRQQGKTI---IDAKTKYEEDELKRLAEQKRREKEEDRLYREKLKN 512
+A+E E + E +++ I ++K E ELK++ EQ ++K E Y EK+KN
Sbjct: 94 KAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAE---YTEKMKN 150
Query: 513 QIALDRETRKKKFPAISAKRNSD 581
+IAL + ++K I AKR D
Sbjct: 151 KIALLHKEAEEKRAMIEAKRGED 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,449,042
Number of Sequences: 369166
Number of extensions: 1425227
Number of successful extensions: 9402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8928
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)