Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J16
(727 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13564|APBP1_HUMAN Amyloid protein-binding protein 1 (Am... 100 5e-21
sp|Q8VBW6|APBP1_MOUSE Amyloid protein-binding protein 1 (Am... 100 5e-21
sp|Q9Z1A5|APBP1_RAT Amyloid protein-binding protein 1 (Amyl... 100 7e-21
sp|P42744|AXR1_ARATH Auxin-resistance protein AXR1 99 9e-21
sp|Q12059|ULA1_YEAST Ubiquitin-activating enzyme E1-like 1 40 0.008
sp|P22314|UBE1_HUMAN Ubiquitin-activating enzyme E1 (A1S9 p... 39 0.014
sp|Q02053|UBE1_MOUSE Ubiquitin-activating enzyme E1 1 39 0.014
sp|Q29504|UBE1_RABIT Ubiquitin-activating enzyme E1 39 0.014
sp|Q9GKR6|CAYP2_MACFA Calcyphosine-2 33 0.78
sp|P09003|MI25_TOBAC Mitochondrial 22 kDa protein (ORF 25) 33 0.78
>sp|Q13564|APBP1_HUMAN Amyloid protein-binding protein 1 (Amyloid beta precursor
protein-binding protein 1, 59 kDa) (APP-BP1)
(Protooncogene protein 1) (HPP1)
Length = 534
Score = 100 bits (248), Expect = 5e-21
Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 4/223 (1%)
Frame = +1
Query: 13 RGDIPDMTADTERYVNIQRIYRLAADKDVLHLEKHVLRLCQTF-QIPISDELCRNNIARF 189
RG IPDM AD+ +Y+ +Q +YR A KD + HV +L Q+ Q P + + +
Sbjct: 326 RGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAP--ESISEKELKLL 383
Query: 190 ARNCQHIQILSSYSLERELKTSPTHTDELVCP---ETDELSWYLTLRAAVSFFTVERRWP 360
N ++++ SL E + DE++ +E+ YL LRA F + R+P
Sbjct: 384 CSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYP 443
Query: 361 GQRQIDYEIDVSHLRKLLQQDLNACAKLKDASVKDDFXXXXXXXXXXXXITLF*EMCRFS 540
G E D+ L+ L L VKDD+ E CR+
Sbjct: 444 GVSNYQVEEDIGKLKSCLTGFLQEYGL--SVMVKDDYVH---------------EFCRYG 486
Query: 541 GVQLHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAIRQTT 669
+ H++ AF+ G AAQEVIK+IT Q+V +Y+ + QT+
Sbjct: 487 AAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTS 529
>sp|Q8VBW6|APBP1_MOUSE Amyloid protein-binding protein 1 (Amyloid beta precursor
protein-binding protein 1, 59 kDa) (APP-BP1)
Length = 534
Score = 100 bits (248), Expect = 5e-21
Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 4/223 (1%)
Frame = +1
Query: 13 RGDIPDMTADTERYVNIQRIYRLAADKDVLHLEKHVLRLCQTF-QIPISDELCRNNIARF 189
RG IPDM AD+ +Y+ +Q +YR A KD + HV +L Q+ Q P + + +
Sbjct: 326 RGTIPDMIADSNKYIKLQNVYREKAKKDAAAVGNHVAKLLQSVGQAP--ESISEKELKLL 383
Query: 190 ARNCQHIQILSSYSLERELKTSPTHTDELVCP---ETDELSWYLTLRAAVSFFTVERRWP 360
N ++++ SL E + DE++ +E+ YL LRA F R+P
Sbjct: 384 CSNSAFLRVVRCRSLAEEYGLDTVNKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYP 443
Query: 361 GQRQIDYEIDVSHLRKLLQQDLNACAKLKDASVKDDFXXXXXXXXXXXXITLF*EMCRFS 540
G E D+ L+ L L VKDD+ E CR+
Sbjct: 444 GVSNYQVEEDIGKLKSCLTGFLQEYGL--SVMVKDDYVH---------------EFCRYG 486
Query: 541 GVQLHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAIRQTT 669
+ H++ AF+ G AAQEVIK+IT Q+V +Y+ + QT+
Sbjct: 487 AAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTS 529
>sp|Q9Z1A5|APBP1_RAT Amyloid protein-binding protein 1 (Amyloid beta precursor
protein-binding protein 1, 59 kDa) (APP-BP1)
Length = 534
Score = 99.8 bits (247), Expect = 7e-21
Identities = 68/223 (30%), Positives = 102/223 (45%), Gaps = 4/223 (1%)
Frame = +1
Query: 13 RGDIPDMTADTERYVNIQRIYRLAADKDVLHLEKHVLRLCQTF-QIPISDELCRNNIARF 189
RG IPDM AD+ +Y+ +Q +YR A KD + HV +L Q+ Q P + + +
Sbjct: 326 RGTIPDMIADSNKYIKLQNVYREKAKKDAAAVGNHVAKLLQSCGQAP--ESISEKELKLL 383
Query: 190 ARNCQHIQILSSYSLERELKTSPTHTDELVCP---ETDELSWYLTLRAAVSFFTVERRWP 360
N ++++ SL E + DE++ +E+ YL LRA F R+P
Sbjct: 384 CSNSAFLRVVRCRSLAEEYGLHTVNKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYP 443
Query: 361 GQRQIDYEIDVSHLRKLLQQDLNACAKLKDASVKDDFXXXXXXXXXXXXITLF*EMCRFS 540
G E D+ L+ L L VKDD+ E CR+
Sbjct: 444 GVSNYQVEEDIGKLKSCLTGFLQEYGL--SVMVKDDYVH---------------EFCRYG 486
Query: 541 GVQLHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAIRQTT 669
+ H+V AF+ G AAQEVIK+IT Q+V +Y+ + QT+
Sbjct: 487 AAEPHTVAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTS 529
>sp|P42744|AXR1_ARATH Auxin-resistance protein AXR1
Length = 540
Score = 99.4 bits (246), Expect = 9e-21
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 6/229 (2%)
Frame = +1
Query: 16 GDIPDMTADTERYVNIQRIYRLAADKDVLHLEKHVLRLCQTFQIPISDELCRNNIARFAR 195
G IPDMT+ TE Y+N+Q+IY A+ D L +E+ V + + S + + I F +
Sbjct: 332 GSIPDMTSSTEHYINLQKIYLAKAEADFLVIEERVKNILKKIGRDPSS-IPKPTIKSFCK 390
Query: 196 NCQHIQILSSYSLERELKT-SPTHTDELVCPE--TDELSWYLTLRAAVSFFTVERRWPGQ 366
N + +++ +E E + S T + + E + + +Y+ LRAA F ++PGQ
Sbjct: 391 NARKLKLCRYRMVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKFPGQ 450
Query: 367 RQIDYEIDVSHLRKL---LQQDLNACAKLKDASVKDDFXXXXXXXXXXXXITLF*EMCRF 537
+ D+S L+ L DL + SV D L EMCRF
Sbjct: 451 FDGGMDEDISRLKTTALSLLTDLGC-----NGSVLPD--------------DLIHEMCRF 491
Query: 538 SGVQLHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAIRQTTNLIDI 684
++H V AF+ G+A+QEVIKL+T Q+VP++ ++N I + L+ +
Sbjct: 492 GASEIHVVSAFVGGIASQEVIKLVTKQFVPMLGTYIFNGIDHKSQLLKL 540
>sp|Q12059|ULA1_YEAST Ubiquitin-activating enzyme E1-like 1
Length = 462
Score = 39.7 bits (91), Expect = 0.008
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 553 HSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAIRQTT 669
+SV AF G QE IKLIT YVP+ +YN I ++
Sbjct: 419 YSVMAFFGGAVVQEAIKLITHHYVPIDNLFLYNGINNSS 457
Score = 32.7 bits (73), Expect = 1.0
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 16 GDIPDMTADTERYVNIQRIYRLAADKDVLHLEKHVLRLCQTFQIPISDELC 168
G +PDM + TE Y+ ++++Y + A D +E+ + R + + + C
Sbjct: 311 GTLPDMESTTENYIRLKKLYEVKAKLDKSRVEESLARSKKIVSQDVLETFC 361
>sp|P22314|UBE1_HUMAN Ubiquitin-activating enzyme E1 (A1S9 protein)
Length = 1058
Score = 38.9 bits (89), Expect = 0.014
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +1
Query: 550 LHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAI 657
L + AFI G+AAQEV+K +G+++P+MQ L ++A+
Sbjct: 394 LAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDAL 429
>sp|Q02053|UBE1_MOUSE Ubiquitin-activating enzyme E1 1
Length = 1058
Score = 38.9 bits (89), Expect = 0.014
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +1
Query: 550 LHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAI 657
L + AFI G+AAQEV+K +G+++P+MQ L ++A+
Sbjct: 394 LAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDAL 429
>sp|Q29504|UBE1_RABIT Ubiquitin-activating enzyme E1
Length = 1058
Score = 38.9 bits (89), Expect = 0.014
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +1
Query: 550 LHSVCAFIAGVAAQEVIKLITGQYVPVMQPLMYNAI 657
L + AFI G+AAQEV+K +G+++P+MQ L ++A+
Sbjct: 394 LAPINAFIGGLAAQEVMKACSGKFMPIMQWLYFDAL 429
>sp|Q9GKR6|CAYP2_MACFA Calcyphosine-2
Length = 313
Score = 33.1 bits (74), Expect = 0.78
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +1
Query: 202 QHIQILSSYSLERELKTSPTHTDELVCPETDELSW 306
+H Q++S +S E E+K+S T ++ C ++DE+S+
Sbjct: 249 KHSQVISGHSTEEEIKSSFLETLKVACSKSDEVSY 283
>sp|P09003|MI25_TOBAC Mitochondrial 22 kDa protein (ORF 25)
Length = 198
Score = 33.1 bits (74), Expect = 0.78
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -3
Query: 401 KCETSIS*SICR*PGQRRSTVKNDTAARKVRYQDNSSVSGH 279
KCE ++ +CR + +T+ N T++R++R QD+ ++ H
Sbjct: 115 KCEKTVQALLCRNLNVKSATLPNATSSRRIRLQDDIAIKMH 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,490,333
Number of Sequences: 369166
Number of extensions: 1484086
Number of successful extensions: 3632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3624
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)