Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J15
(625 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 212 5e-55
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 209 4e-54
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 209 5e-54
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 209 6e-54
sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial pre... 201 1e-51
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 200 3e-51
sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor 198 8e-51
sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precu... 198 1e-50
sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor 197 1e-50
sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor 197 2e-50
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 212 bits (540), Expect = 5e-55
Identities = 100/138 (72%), Positives = 120/138 (86%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
+D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+I
Sbjct: 324 SDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKI 383
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
VP+VL ++ K NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG
Sbjct: 384 VPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALG 443
Query: 365 LPIERPKSFSTDKLIELV 418
P+ERPKS STD LI+LV
Sbjct: 444 FPLERPKSMSTDGLIKLV 461
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 209 bits (533), Expect = 4e-54
Identities = 100/143 (69%), Positives = 123/143 (86%), Gaps = 1/143 (0%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
+D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP+ P+FK+V+QLY+I
Sbjct: 324 SDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKI 383
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
VP+VL ++ K NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG
Sbjct: 384 VPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALG 443
Query: 365 LPIERPKSFSTDKLIELV-RKSG 430
P+ERPKS ST+ L++ V KSG
Sbjct: 444 FPLERPKSMSTEGLMKFVDSKSG 466
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 209 bits (532), Expect = 5e-54
Identities = 97/138 (70%), Positives = 119/138 (86%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
+D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+I
Sbjct: 324 SDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDPMFKLVAQLYKI 383
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
VP++L ++ K NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG
Sbjct: 384 VPNILLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALG 443
Query: 365 LPIERPKSFSTDKLIELV 418
P+ERPKS STD L++ V
Sbjct: 444 FPLERPKSMSTDGLMKFV 461
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 209 bits (531), Expect = 6e-54
Identities = 99/136 (72%), Positives = 116/136 (85%)
Frame = +2
Query: 8 DKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIV 187
D + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IV
Sbjct: 298 DASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIV 357
Query: 188 PDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGL 367
P+VL ++ ANP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG
Sbjct: 358 PNVLLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGF 417
Query: 368 PIERPKSFSTDKLIEL 415
P+ERPKS STD LI L
Sbjct: 418 PLERPKSMSTDGLIAL 433
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial precursor
Length = 433
Score = 201 bits (512), Expect = 1e-51
Identities = 92/137 (67%), Positives = 114/137 (83%)
Frame = +2
Query: 11 KDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVP 190
+ + +++ KTL +G+VVPGYGH VLRKTDPRY+CQREFALKHLPD PLF++VS+LY++VP
Sbjct: 294 EQLKDYVWKTLNSGKVVPGYGHGVLRKTDPRYICQREFALKHLPDDPLFQLVSKLYEVVP 353
Query: 191 DVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLP 370
+L + K+ NP+PNVDAHSGVLL YYG+TE YYTVLFG+SR+LGI S LIWDRALGLP
Sbjct: 354 PILTELGKVKNPWPNVDAHSGVLLNYYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLP 413
Query: 371 IERPKSFSTDKLIELVR 421
+ERPKS + D L R
Sbjct: 414 LERPKSVNMDWLDNFTR 430
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 200 bits (508), Expect = 3e-51
Identities = 95/137 (69%), Positives = 116/137 (84%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
T++ + E++ K LK+GQVVPGYGHAVLRKTDPRY CQREFALKHLP+ LFK+VS LY+I
Sbjct: 326 TEEQLKEWVWKHLKSGQVVPGYGHAVLRKTDPRYECQREFALKHLPNDDLFKLVSTLYKI 385
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
P +L ++ K NP+PNVD+HSGVLLQY+GMTE ++YTVLFG+SRALG LS LIW R +G
Sbjct: 386 TPGILLEQGKAKNPWPNVDSHSGVLLQYFGMTEMSFYTVLFGVSRALGCLSQLIWARGMG 445
Query: 365 LPIERPKSFSTDKLIEL 415
LP+ERPKS STD LI+L
Sbjct: 446 LPLERPKSHSTDGLIKL 462
>sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor
Length = 474
Score = 198 bits (504), Expect = 8e-51
Identities = 95/138 (68%), Positives = 113/138 (81%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
+D+ I +++ TL AG+VVPGYGHAVLRKTDPRY QREFAL+ LPD P+FK+VSQ+Y+I
Sbjct: 333 SDQSIKDYLWSTLNAGRVVPGYGHAVLRKTDPRYTSQREFALRKLPDDPMFKLVSQVYKI 392
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
P VL + K NP+PNVDAHSGVLLQYYG+TE NYYTVLFG+SRALG+L LI DRA G
Sbjct: 393 APGVLTEHGKTKNPYPNVDAHSGVLLQYYGLTEANYYTVLFGVSRALGVLPQLIIDRAFG 452
Query: 365 LPIERPKSFSTDKLIELV 418
PIERPKSFST+ +LV
Sbjct: 453 APIERPKSFSTEAYAKLV 470
>sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precursor
Length = 479
Score = 198 bits (503), Expect = 1e-50
Identities = 93/136 (68%), Positives = 113/136 (83%)
Frame = +2
Query: 17 IVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDV 196
I +++ TL AG+VVPGYGHAVLRKTDPRY QREFALKH PDY LFK+VS +Y++ P V
Sbjct: 339 IEKYLWDTLNAGRVVPGYGHAVLRKTDPRYTAQREFALKHFPDYELFKLVSTIYEVAPGV 398
Query: 197 LGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIE 376
L K K NP+PNVD+HSGVLLQYYG+TE ++YTVLFG++RA+G+L LI DRA+G PIE
Sbjct: 399 LTKHGKTKNPWPNVDSHSGVLLQYYGLTEASFYTVLFGVARAIGVLPQLIIDRAVGAPIE 458
Query: 377 RPKSFSTDKLIELVRK 424
RPKSFST+K ELV+K
Sbjct: 459 RPKSFSTEKYKELVKK 474
>sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor
Length = 469
Score = 197 bits (502), Expect = 1e-50
Identities = 92/140 (65%), Positives = 117/140 (83%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
+D+ I +++ TL AG+VVPGYGHAVLRKTDPRY QR+FA +HLP+ P+F++VSQ+Y+I
Sbjct: 329 SDEAITKYLWDTLNAGRVVPGYGHAVLRKTDPRYSAQRKFAQEHLPEDPMFQLVSQVYKI 388
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
P VL + K NP+PNVDAHSGVLLQ+YG+TE NYYTVLFG+SRA+G+L LI DRA+G
Sbjct: 389 APKVLTEHGKTKNPYPNVDAHSGVLLQHYGLTEANYYTVLFGVSRAIGVLPQLIIDRAVG 448
Query: 365 LPIERPKSFSTDKLIELVRK 424
PIERPKS+STDK IE+ +K
Sbjct: 449 APIERPKSYSTDKWIEICKK 468
>sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor
Length = 475
Score = 197 bits (501), Expect = 2e-50
Identities = 94/132 (71%), Positives = 111/132 (84%)
Frame = +2
Query: 5 TDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQI 184
+D+ I ++ TL AGQVVPGYGHAVLRKTDPRY+ QREFAL+ LPD P+FK+VSQ+Y+I
Sbjct: 333 SDEAIKNYLWSTLNAGQVVPGYGHAVLRKTDPRYVSQREFALRKLPDDPMFKLVSQVYKI 392
Query: 185 VPDVLGKKSKIANPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALG 364
P VL + K NP+PNVDAHSGVLLQYYG+TE NYYTVLFG+SRALG+L LI DRALG
Sbjct: 393 APGVLTEHGKTKNPYPNVDAHSGVLLQYYGLTEANYYTVLFGVSRALGVLPQLIIDRALG 452
Query: 365 LPIERPKSFSTD 400
PIERPKS+ST+
Sbjct: 453 APIERPKSYSTE 464
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,525,926
Number of Sequences: 369166
Number of extensions: 1258294
Number of successful extensions: 3427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)