Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J13
(243 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 78 7e-15
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 77 1e-14
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 77 1e-14
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 76 2e-14
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 76 2e-14
sp|P13471|RS14_RAT 40S ribosomal protein S14 76 3e-14
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 76 3e-14
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 76 3e-14
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 75 5e-14
sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59) 75 6e-14
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 77.8 bits (190), Expect = 7e-15
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+HV++RATGG K++T SGMKIGRIEDVTPIP D+
Sbjct: 79 DVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDS 138
Query: 182 T 184
T
Sbjct: 139 T 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 77.0 bits (188), Expect = 1e-14
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+HV++RATGG K++T SGMKIGRIEDVTPIP D+
Sbjct: 79 DVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDS 138
Query: 182 T 184
T
Sbjct: 139 T 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 77.0 bits (188), Expect = 1e-14
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+HV++RATGG K++T SGMKIGRIEDVTPIP D+
Sbjct: 79 DVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDS 138
Query: 182 T 184
T
Sbjct: 139 T 139
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 76.3 bits (186), Expect = 2e-14
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+H+++RATGG K++T SGMKIGRIEDVTP+P D+
Sbjct: 79 DVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDS 138
Query: 182 T 184
T
Sbjct: 139 T 139
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 76.3 bits (186), Expect = 2e-14
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+H+++RATGG K++T SGMKIGRIEDVTP+P D+
Sbjct: 78 DVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDS 137
Query: 182 T 184
T
Sbjct: 138 T 138
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 75.9 bits (185), Expect = 3e-14
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+H+++RATGG +++T SGMKIGRIEDVTPIP D+
Sbjct: 80 DVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDS 139
Query: 182 T 184
T
Sbjct: 140 T 140
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 75.9 bits (185), Expect = 3e-14
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCK+LGITA+H+++RATGG +++T SGMKIGRIEDVTPIP D+
Sbjct: 80 DVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDS 139
Query: 182 T 184
T
Sbjct: 140 T 140
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 75.9 bits (185), Expect = 3e-14
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA RCK+LGITA+H+++RATGG K++T SGMKIGRIEDVTPIP D+
Sbjct: 79 DVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDS 138
Query: 182 T 184
T
Sbjct: 139 T 139
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA+RCKQLGI A+H+++RATGGT+++T +GMKIGRIEDVTPIP D
Sbjct: 81 DVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDC 140
Query: 182 T 184
T
Sbjct: 141 T 141
>sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59)
Length = 137
Score = 74.7 bits (182), Expect = 6e-14
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +2
Query: 2 DVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDT 181
DVA +CK++GITAVH+++RATGGT+S+T SG++IGRIEDVTP+P D+
Sbjct: 66 DVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDS 125
Query: 182 T 184
T
Sbjct: 126 T 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,489,121
Number of Sequences: 369166
Number of extensions: 267155
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)