Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J04
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37167|ACTP_ACACA Actophorin 54 1e-07
sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) ... 53 2e-07
sp|Q9LQ81|ADFX_ARATH Actin-depolymerizing factor like At1g0... 52 5e-07
sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (A... 50 1e-06
sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform) 50 1e-06
sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform... 50 1e-06
sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform) 50 1e-06
sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform) 50 1e-06
sp|Q9R0P5|DEST_MOUSE Destrin (Actin-depolymerizing factor) ... 50 1e-06
sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform) 50 2e-06
>sp|P37167|ACTP_ACACA Actophorin
Length = 138
Score = 53.5 bits (127), Expect = 1e-07
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGCYALYDYE--------GTLAFISWIPETMKINSRMIMA 161
G YE FK + E + YA++DYE + FI W P++ I S+M+
Sbjct: 43 GGPNATYEDFKSQLPERDCR---YAIFDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYT 99
Query: 162 ASKSEIATRMVGVKAKIEANSEDEIDESVIKEKTASKV 275
++K I ++VG++ +++A EI E + E+ V
Sbjct: 100 STKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKKDV 137
>sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 53.1 bits (126), Expect = 2e-07
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYDY--------EGTLAFISWIPETMKINSRMIM 158
GD+G +H +E ++ C YALYD + L F W PE + S+MI
Sbjct: 58 GDVGVTVTDPFKHFVEMLPEKDCRYALYDASFETKESKKEELMFFLWAPEQAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 260
A+SK I + G+K + +AN ++++ + I EK
Sbjct: 118 ASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
>sp|Q9LQ81|ADFX_ARATH Actin-depolymerizing factor like At1g01750 (ADF-like)
Length = 140
Score = 51.6 bits (122), Expect = 5e-07
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Frame = +3
Query: 12 LGTPYEKFKQHIIETYAQEGCYALYDYEGT---------LAFISWIPETMKINSRMIMAA 164
LG P E ++ E YA+YDY+ T + FI+W P+T ++ S+M+ A+
Sbjct: 46 LGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYAS 105
Query: 165 SKSEIATRMVGVKAKIEANSEDEIDESVIK 254
SK + G++ +++A E+ +IK
Sbjct: 106 SKDRFKRELDGIQVELQATDPSEMSLDIIK 135
>sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (ADF)
sp|P60981|DEST_HUMAN Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYDY--------EGTLAFISWIPETMKINSRMIM 158
GD+G +H + ++ C YALYD + L F W PE + S+MI
Sbjct: 58 GDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 260
A+SK I + G+K + +AN ++++ + I EK
Sbjct: 118 ASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151
>sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 50.4 bits (119), Expect = 1e-06
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIM 158
GD+G E ++ C YALYD YE L FI W PE+ + S+MI
Sbjct: 58 GDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 275
A+SK I + G+K + + N D+I D S + EK V
Sbjct: 118 ASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNV 157
>sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform) (18 kDa phosphoprotein)
(p18)
Length = 166
Score = 50.4 bits (119), Expect = 1e-06
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIM 158
GD+G + ++ + C YALYD YE L FI W PE+ + S+MI
Sbjct: 58 GDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 260
A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 118 ASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 50.4 bits (119), Expect = 1e-06
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIM 158
GD+G E ++ C YALYD YE L FI W PE+ + S+MI
Sbjct: 58 GDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEI-DESVIKEKTASKV 275
A+SK I + G+K + + N D+I D S + EK V
Sbjct: 118 ASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGSV 157
>sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 50.4 bits (119), Expect = 1e-06
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIM 158
GD+G + ++ + C YALYD YE L FI W PE+ + S+MI
Sbjct: 58 GDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 260
A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 118 ASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|Q9R0P5|DEST_MOUSE Destrin (Actin-depolymerizing factor) (ADF) (Sid 23)
Length = 165
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYDY--------EGTLAFISWIPETMKINSRMIM 158
GD+G +H + ++ C YALYD + L F W PE + S+MI
Sbjct: 58 GDVGATITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPEQAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEIDESVIKEK 260
A+SK I + G+K + +AN ++++ + I EK
Sbjct: 118 ASSKDAIKKKFPGIKHEYQANGPEDLNRTCIAEK 151
>sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 50.1 bits (118), Expect = 2e-06
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Frame = +3
Query: 6 GDLGTPYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIM 158
GD+G + ++ + C YALYD YE L FI W PE + S+MI
Sbjct: 58 GDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPENAPLKSKMIY 117
Query: 159 AASKSEIATRMVGVKAKIEANSEDEI-DESVIKEK 260
A+SK I ++ G+K +++AN +E+ D + EK
Sbjct: 118 ASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,971,640
Number of Sequences: 369166
Number of extensions: 573142
Number of successful extensions: 1415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)