Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J03
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40368|NUP82_YEAST Nucleoporin NUP82 (Nuclear pore prote... 33 0.45
sp|P52527|VU25_HHV6U U25 protein 33 0.45
sp|Q9T048|DRL27_ARATH Putative disease resistance protein A... 31 2.2
sp|P19140|ENOA_ANAPL Alpha-enolase (2-phospho-D-glycerate h... 30 3.8
sp|Q8RGX1|COAD_FUSNN Phosphopantetheine adenylyltransferase... 30 4.9
sp|P36070|RRN3_YEAST RNA polymerase I-specific transcriptio... 30 4.9
sp|P37608|LCN3_LACLA Lacticin 481/lactococcin transport/pro... 29 8.4
sp|P51913|ENOA_CHICK Alpha-enolase (2-phospho-D-glycerate h... 29 8.4
sp|P53858|BNI4_YEAST Protein BNI4 29 8.4
sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 comp... 29 8.4
>sp|P40368|NUP82_YEAST Nucleoporin NUP82 (Nuclear pore protein NUP82)
Length = 713
Score = 33.1 bits (74), Expect = 0.45
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 48 PYNSSLFLTENKKVFTVLNRQSTRIPELDGCVDIIESRGPISVCYFGNGICKIYDMTNKT 227
P+ S+ L K + +LN+ LD D+I R I F + K+++ N
Sbjct: 210 PFLPSVLLLNEKDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQF---VSKLHENWNSR 266
Query: 228 IFELEISESIKLAK 269
+++I + +LAK
Sbjct: 267 FGKVDIQKEYRLAK 280
>sp|P52527|VU25_HHV6U U25 protein
Length = 316
Score = 33.1 bits (74), Expect = 0.45
Identities = 21/102 (20%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +3
Query: 183 FGNGICKIYDMTNKTIFELEISESIKLAKHSQSILSLLDVQNRLHLYKFTKKTFSYEE-I 359
F NG+ Y + + L+ + ++ + HS+S LL +N FT KT+ Y+ +
Sbjct: 113 FSNGLRFFYPIYETCDYALDSTVALDMIAHSKSFSELLHYRNERKNAFFTLKTYPYKTFV 172
Query: 360 QVIQIPTSRNISAMSDVFNKQIFITVENEIYSIEYN*FIDYR 485
+ + + S + +++ ++ + ++ +++N F D+R
Sbjct: 173 RFCNLSMTEFSSRHLIQWRRKLQTSLLDVVFIVQHNFFGDWR 214
>sp|Q9T048|DRL27_ARATH Putative disease resistance protein At4g27190
Length = 985
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = +3
Query: 252 SIKLAKHSQSILSLLDVQNRLHLYKFTKKTFS---------YEEIQVIQIPTSRNISAMS 404
S +K S IL LL LHL + +TFS E +++I+I R + +
Sbjct: 794 STNTSKQSSDILDLLPNLEELHLRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLL 853
Query: 405 DVFNKQIFITVEN 443
D K+ F+T+ N
Sbjct: 854 D---KRNFLTIPN 863
>sp|P19140|ENOA_ANAPL Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Tau-crystallin)
Length = 434
Score = 30.0 bits (66), Expect = 3.8
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 135 GCVDIIESRGPISVCYFGNGICKIYDMTNKTIFELEISESIKLAKHSQSILSLLDVQNRL 314
G + +E R Y G G+ K + NKTI IS+++ + + + +LD+
Sbjct: 42 GIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALISKNVNVVEQDKIDKLMLDMDGSE 101
Query: 315 HLYKF 329
+ KF
Sbjct: 102 NKSKF 106
>sp|Q8RGX1|COAD_FUSNN Phosphopantetheine adenylyltransferase (Pantetheine-phosphate
adenylyltransferase) (PPAT) (Dephospho-CoA
pyrophosphorylase)
Length = 163
Score = 29.6 bits (65), Expect = 4.9
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 261 LAKHSQSIL--SLLDVQNRLH--LYKFTKKTFSYEEIQVIQIPTSRNISAMSDVFNKQI 425
+AK+S +IL L DV++ Y F K S E+ I IPTS + +S F K++
Sbjct: 77 MAKNSCNILIKGLRDVKDFSEEMTYSFANKKLSNGEVDTIFIPTSEKYTYVSSTFVKEL 135
>sp|P36070|RRN3_YEAST RNA polymerase I-specific transcription initiation factor RRN3
Length = 627
Score = 29.6 bits (65), Expect = 4.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 302 YI**RQNRLGMFGKLYRFRNFQFKYCLVCHIIDFTNSISEITNRNW 165
Y+ R+ + G + RF++F + +C+I F ++I T+ NW
Sbjct: 453 YVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNW 498
>sp|P37608|LCN3_LACLA Lacticin 481/lactococcin transport/processing ATP-binding protein
lcnDR3
Length = 691
Score = 28.9 bits (63), Expect = 8.4
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 288 SLLDVQNRLHLYKFTKKTFSYEEIQVIQIPTSRNISAMSD----VFNKQIFITVENE-IY 452
S LD QNR+H+YK + Y+ +I I ++ D + +K+I I N +
Sbjct: 622 SSLDNQNRIHIYKNVLENPDYKSQTIIMISHHLDVLKYVDRVIYIDDKKIMIDKHNNLLL 681
Query: 453 SIEYN*FID 479
+ YN F++
Sbjct: 682 NDSYNSFVN 690
>sp|P51913|ENOA_CHICK Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Phosphopyruvate
hydratase)
Length = 434
Score = 28.9 bits (63), Expect = 8.4
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 135 GCVDIIESRGPISVCYFGNGICKIYDMTNKTIFELEISESIKLAKHSQSILSLLDVQNRL 314
G + +E R Y G G+ K + NKTI IS+++ + + + +L++
Sbjct: 42 GIYEALELRDNDKTRYLGKGVSKAVEHVNKTIAPALISKNVNVVEQEKIDKLMLEMDGTE 101
Query: 315 HLYKF 329
+ KF
Sbjct: 102 NKSKF 106
>sp|P53858|BNI4_YEAST Protein BNI4
Length = 892
Score = 28.9 bits (63), Expect = 8.4
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +3
Query: 222 KTIFELEISESIKLAKHSQSILSLLDVQNRLHLYKFTKKTFSYEEIQVIQIPTSRNISAM 401
K I + ++ SIK +S+L DV++ + F + E+Q + + TS ++SA+
Sbjct: 40 KEISDQSLNSSIKPC---ESVLDR-DVESSVLQRSFGESNARDSEVQTVNMTTSPSLSAL 95
Query: 402 SDVFNKQ 422
+D+ N++
Sbjct: 96 ADILNER 102
>sp|Q8N3C0|HELC1_HUMAN Activating signal cointegrator 1 complex subunit 3 (ASC-1 complex
subunit p200) (Trip4 complex subunit p200) (Helicase, ATP
binding 1)
Length = 2202
Score = 28.9 bits (63), Expect = 8.4
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 315 VIYFVHLIKTK*IGNVWQALSIQKFPIQILSCLSYHRFYKFHFRNNKQKLVRVTL 151
+I F HLI + + L +Q PI L C +Y Y F N Q + TL
Sbjct: 1284 IINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTL 1338
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,146,485
Number of Sequences: 369166
Number of extensions: 1141689
Number of successful extensions: 2760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2760
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)