Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I15
(124 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q75C78|GRP78_ASHGO 78 kDa glucose-regulated protein homo... 30 1.7
sp|P41755|DHE2_ACHKL NAD-specific glutamate dehydrogenase (... 30 2.3
sp|P09435|HSP73_YEAST Heat shock protein SSA3 28 8.6
sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A 28 8.6
>sp|Q75C78|GRP78_ASHGO 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BIP)
Length = 674
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 82 RLSKDDIERMVAEA 123
RLSKDDIERMVAEA
Sbjct: 548 RLSKDDIERMVAEA 561
>sp|P41755|DHE2_ACHKL NAD-specific glutamate dehydrogenase (NAD-GDH)
Length = 1063
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 123 SFSDHPFNIIFR*STFIISNCNFIFLFPSSLFN 25
SF H FNII +T ++ N N +F F S LF+
Sbjct: 519 SFLHHAFNIILGEATLVVGNGNLVF-FTSRLFD 550
>sp|P09435|HSP73_YEAST Heat shock protein SSA3
Length = 649
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 82 RLSKDDIERMVAEA 123
RLSKDDI+RMV+EA
Sbjct: 507 RLSKDDIDRMVSEA 520
>sp|P09446|HSP7A_CAEEL Heat shock 70 kDa protein A
Length = 640
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 82 RLSKDDIERMVAEA 123
RLSKDDIERMV EA
Sbjct: 510 RLSKDDIERMVNEA 523
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.128 0.318
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,216,487
Number of Sequences: 369166
Number of extensions: 90995
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 68,354,980
effective HSP length: 14
effective length of database: 65,768,690
effective search space used: 1709985940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)