Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I11
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35895|GU03_RAT Possible gustatory receptor clone PTE03 29 3.9
sp|P35899|GU58_RAT Possible gustatory receptor clone PTE58 28 5.1
sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATP... 28 6.7
>sp|P35895|GU03_RAT Possible gustatory receptor clone PTE03
Length = 168
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 77 LCVCVCVRAYY*FMIHTLRIQFCTYLKLIHFIC 175
LC+ + + MI LR+ FCT+L++ H+ C
Sbjct: 74 LCISIVDALLHGLMI--LRLSFCTFLEIPHYFC 104
>sp|P35899|GU58_RAT Possible gustatory receptor clone PTE58
Length = 232
Score = 28.5 bits (62), Expect = 5.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 128 LRIQFCTYLKLIHFIC 175
LR+ FCT LK+ HF+C
Sbjct: 104 LRLSFCTDLKIPHFVC 119
>sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3
Length = 1656
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 119 IHTLRIQFCTYLKLIHFICASIIY-KYRLLIDHNLWDLELFLLFNTL 256
I T + CT+ K I F +IY +Y + +L++ +FNTL
Sbjct: 1281 IRTSKFMLCTFYKEITFYFTQLIYQRYTMFSGSSLYEPWSLSMFNTL 1327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,996,676
Number of Sequences: 369166
Number of extensions: 367373
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)