Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I07
(740 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07390|PT494_YEAST COX3 mRNA-specific translational acti... 30 6.8
sp|Q5I2A0|SPA3G_MOUSE Serine protease inhibitor A3G (Serine... 30 6.8
sp|Q96SD1|DCR1C_HUMAN Artemis protein (DNA cross-link repai... 30 8.8
sp|Q5QJC2|DCR1C_CHICK Artemis protein (DNA cross-link repai... 30 8.8
sp|Q5R6Z9|DCR1C_PONPY Artemis protein (DNA cross-link repai... 30 8.8
sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocyte (Er... 30 8.8
>sp|P07390|PT494_YEAST COX3 mRNA-specific translational activator PET494
Length = 489
Score = 30.0 bits (66), Expect = 6.8
Identities = 25/100 (25%), Positives = 44/100 (44%)
Frame = +1
Query: 70 IETAMKDLPHGLDAMNKCSEITQEFSNKNKASILHQFYAWHLGNIIRNCVQNCDYSTLES 249
++T +K G +NK +T S + KASI H YA+ L R+ +Q +
Sbjct: 163 LDTPIKQYTLGDLILNKRENVTDYDSQRAKASIFHMLYAYML---YRDVIQ-------PT 212
Query: 250 SLNRPPANGSWKDCEIVLNKLKDVYNLKEKDSVYNSLREK 369
++ + + W+ +L K K+V + V+ L K
Sbjct: 213 TMTQNNNSEEWRREVELLTKGKEVQGTHRRIDVFYDLWNK 252
>sp|Q5I2A0|SPA3G_MOUSE Serine protease inhibitor A3G (Serine protease inhibitor 2A)
(Serpin A3G) (Serpin 2A)
Length = 440
Score = 30.0 bits (66), Expect = 6.8
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +1
Query: 109 AMNKCSEITQEFSNKNKAS-ILHQFYAWHLGNIIRNCVQNCDYSTLESSLNRPPANGSWK 285
A+ + T +F KA+ +++ + + H I+ + STL +N G WK
Sbjct: 147 ALYQAEAFTADFQQPLKATKLINDYVSNHTQGKIKELISGLKESTLMVLVNYIYFKGKWK 206
Query: 286 DCEIVLNKLKDVYNLKEKDSVYNSLREKFSVTFPF 390
+ + K + L EK SV S+ + +T P+
Sbjct: 207 NPFDPNDTFKSEFYLDEKRSVIVSMMKTGYLTTPY 241
>sp|Q96SD1|DCR1C_HUMAN Artemis protein (DNA cross-link repair 1C protein) (SNM1-like
protein) (A-SCID protein) (hSNM1C)
Length = 692
Score = 29.6 bits (65), Expect = 8.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 294 LTVLPGAVCGGAVQGRFQGRIITVLYTIPDNVAQ 193
+T+LP C G+V FQG TVLYT +AQ
Sbjct: 108 VTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQ 141
>sp|Q5QJC2|DCR1C_CHICK Artemis protein (DNA cross-link repair 1C protein) (chSNM1C)
(SNM1-like protein)
Length = 714
Score = 29.6 bits (65), Expect = 8.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 297 DLTVLPGAVCGGAVQGRFQGRIITVLYT 214
++T+LP C G+V FQG TVLYT
Sbjct: 107 EVTLLPAGHCPGSVMFLFQGENGTVLYT 134
>sp|Q5R6Z9|DCR1C_PONPY Artemis protein (DNA cross-link repair 1C protein)
Length = 692
Score = 29.6 bits (65), Expect = 8.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 294 LTVLPGAVCGGAVQGRFQGRIITVLYTIPDNVAQ 193
+T+LP C G+V FQG TVLYT +AQ
Sbjct: 108 VTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQ 141
>sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)
Length = 2415
Score = 29.6 bits (65), Expect = 8.8
Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +1
Query: 1 CFIKFLIIVKQKLPTTGETVRTVIET---AMKDLPHGLDAMNKCSEITQEFSNKNKASI- 168
CF + +I + +K+ T GET + E+ A +DL +N+ + Q ++ K S+
Sbjct: 1225 CFERDIIPLGEKVNTLGETAERLCESHPDATEDLQKQRTELNEAWDTLQGLTSDRKESLN 1284
Query: 169 -LHQFYAW-HLGNIIRNCVQNCDYSTLESSLNRPPANGSWKDCEIVLNKLKDVY-NLKEK 339
H+F+ + + + N ++ T+ ++ P EI+L + ++ + ++K +
Sbjct: 1285 EAHKFFLFLSKASDLENWIK-----TIGGVISSPELAEDLTGTEILLERHQEHHDDIKRE 1339
Query: 340 DSVYNSLRE 366
D + +L +
Sbjct: 1340 DPTFQALED 1348
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,165,669
Number of Sequences: 369166
Number of extensions: 1485483
Number of successful extensions: 3906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3905
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)