Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I04
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VT65|CANB_DROME Calpain B (Calcium-activated neutral p... 243 7e-64
sp|P00789|CANX_CHICK Calpain-1 catalytic subunit (Calpain-1... 217 4e-56
sp|O35920|CAN9_RAT Calpain-9 (Digestive tract-specific calp... 206 7e-53
sp|P35750|CAN1_PIG Calpain-1 catalytic subunit (Calpain-1 l... 205 2e-52
sp|P06815|CAN1_RABIT Calpain-1 catalytic subunit (Calpain-1... 204 2e-52
sp|Q9GLG7|CAN3_MACFA Calpain-3 (Calpain L3) (Calpain p94) (... 204 2e-52
sp|O14815|CAN9_HUMAN Calpain-9 (Digestive tract-specific ca... 204 3e-52
sp|Q9D805|CAN9_MOUSE Calpain-9 (Digestive tract-specific ca... 204 3e-52
sp|P17655|CAN2_HUMAN Calpain-2 catalytic subunit (Calpain-2... 204 3e-52
sp|Q9GLG1|CAN2_MACFA Calpain-2 catalytic subunit (Calpain-2... 204 3e-52
>sp|Q9VT65|CANB_DROME Calpain B (Calcium-activated neutral proteinase B) (CANP B)
[Contains: Calpain B catalytic subunit 1; Calpain B
catalytic subunit 2]
Length = 925
Score = 243 bits (619), Expect = 7e-64
Identities = 122/290 (42%), Positives = 187/290 (64%), Gaps = 2/290 (0%)
Frame = +3
Query: 3 VEFYTIGYAIYQLKDENQG--PLDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIV 176
++ TIG+AIY L D + P +NFFKY ASVA++P FIN REVC R KLPPG Y+IV
Sbjct: 640 IDCLTIGFAIYHLTDRDMQVKPQGLNFFKYRASVARSPHFINTREVCARFKLPPGHYLIV 699
Query: 177 PSTFEPNQEAAFLMRIFSEKPYESGELDEQTAMVPTESSPEANKTATSVPAKAITPADDA 356
PSTF+PN+E F++R+FSE E D++ T+ ++ A S+P DD
Sbjct: 700 PSTFDPNEEGEFIIRVFSETRNNMEENDDEVGFGETD-----DRIAPSLPPPTPKEEDDP 754
Query: 357 QIAALRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMDY 536
Q ALR F+ +AG D E+D EL+ IL+ + + G DGFS + +SMVAM+D
Sbjct: 755 QRIALRRLFDSVAGSDEEVDWQELKRILDHSMRDVMVGS----DGFSKDAVRSMVAMLDK 810
Query: 537 DQSGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNSL 716
D+SG+LGF+EF+ L TD+ W+ FK +D ++G+ + + LR LNS G+ L+N++LN+L
Sbjct: 811 DRSGRLGFEEFEALLTDIAKWRAVFKLYDTRRTGSIDGFHLRGALNSAGYHLNNRLLNAL 870
Query: 717 VMRFANKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFDQDTFIQ 866
R+ ++EG I FDD+++C ++++T E ++ + D++D A F+ D +++
Sbjct: 871 AHRYGSREGQIPFDDFLMCAIKVRTFIEMFRERDTDNSDTAFFNLDDWLE 920
>sp|P00789|CANX_CHICK Calpain-1 catalytic subunit (Calpain-1 large subunit)
(Calcium-activated neutral proteinase) (CANP) (Mu/M-type)
Length = 705
Score = 217 bits (552), Expect = 4e-56
Identities = 112/285 (39%), Positives = 179/285 (62%), Gaps = 4/285 (1%)
Frame = +3
Query: 6 EFYTIGYAIYQLKDENQGPLDVN----FFKYNASVAKAPSFINLREVCGRHKLPPGTYVI 173
+ +TIG+A+Y++ +E QG +V+ FF N S A++ +FINLREV + +LPPG Y++
Sbjct: 428 DMHTIGFAVYEVPEEAQGSQNVHLKKDFFLRNQSRARSETFINLREVSNQIRLPPGEYIV 487
Query: 174 VPSTFEPNQEAAFLMRIFSEKPYESGELDEQTAMVPTESSPEANKTATSVPAKAITPADD 353
VPSTFEP++EA F++R+F+EK ++ ELDE+ + A + IT D
Sbjct: 488 VPSTFEPHKEADFILRVFTEKQSDTAELDEEIS-------------ADLADEEEITEDDI 534
Query: 354 AQIAALRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMD 533
++ F Q+AG+D+EI +EL+ ILN + D K DGFS+++ ++MV +MD
Sbjct: 535 ED--GFKNMFQQLAGEDMEISVFELKTILNRVIARHKD---LKTDGFSLDSCRNMVNLMD 589
Query: 534 YDQSGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNS 713
D S +LG EF++LW +R W F+++D DKSG +SYE+R+ L S GF+L+NK+
Sbjct: 590 KDGSARLGLVEFQILWNKIRSWLTIFRQYDLDKSGTMSSYEMRMALESAGFKLNNKLHQV 649
Query: 714 LVMRFANKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFD 848
+V R+A+ E + FD+++ C V+L+T+F + S D T A+ +
Sbjct: 650 VVARYADAETGVDFDNFVCCLVKLETMFRFFHSMDRDGTGTAVMN 694
>sp|O35920|CAN9_RAT Calpain-9 (Digestive tract-specific calpain) (nCL-4)
Length = 674
Score = 206 bits (524), Expect = 7e-53
Identities = 112/266 (42%), Positives = 171/266 (64%), Gaps = 1/266 (0%)
Frame = +3
Query: 15 TIGYAIYQLKDENQGPLDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIVPSTFEP 194
TIGYAIYQ D++ G L+ +FF+Y+AS+A++ +FINLREV GR +LPPG Y+++PSTFEP
Sbjct: 399 TIGYAIYQCPDKD-GHLNRDFFRYHASLARSKTFINLREVSGRFQLPPGDYILIPSTFEP 457
Query: 195 NQEAAFLMRIFSEKPYESGELDEQTAM-VPTESSPEANKTATSVPAKAITPADDAQIAAL 371
+QEA F +RIFSEK + +LDE + +P P + T ++ Q AL
Sbjct: 458 HQEADFCLRIFSEKKAVTQDLDENIDIDLPELPKPTPQEEETE---------EERQFRAL 508
Query: 372 RDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMDYDQSGK 551
F +IAG+D+E+ A EL+ +LN +K K FK S+ + ++++++MD +GK
Sbjct: 509 ---FRRIAGEDMEVSAEELEYVLNAVLQKKTALK-FKRLRLSLLSCRNIISLMDTSGNGK 564
Query: 552 LGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNSLVMRFA 731
+ F+EF+V W LR W + F +FD DKSG +SYELR L + GF+L + +L +V+R+A
Sbjct: 565 MEFEEFRVFWDKLRYWMDLFLQFDVDKSGTMSSYELRTALKAAGFQLGSHLLQLIVLRYA 624
Query: 732 NKEGLILFDDYILCCVRLKTIFETYK 809
++ + FDDY+ C VRL+ ++
Sbjct: 625 DENLQLDFDDYLNCLVRLENASRVFQ 650
>sp|P35750|CAN1_PIG Calpain-1 catalytic subunit (Calpain-1 large subunit)
(Calcium-activated neutral proteinase 1) (CANP 1)
(Calpain mu-type) (muCANP) (Micromolar-calpain)
Length = 714
Score = 205 bits (521), Expect = 2e-52
Identities = 116/288 (40%), Positives = 171/288 (59%), Gaps = 4/288 (1%)
Frame = +3
Query: 15 TIGYAIYQLKDENQGP---LDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIVPST 185
TIG+A+Y++ E G L +FF NAS A++ FINLREV R +LPPG YV+VPST
Sbjct: 441 TIGFAVYEVPPELVGQPVHLKRDFFLANASRARSEQFINLREVSTRFRLPPGEYVVVPST 500
Query: 186 FEPNQEAAFLMRIFSEKPYESGELDEQT-AMVPTESSPEANKTATSVPAKAITPADDAQI 362
FEPN+E F++R FSEK + ELD+Q A++P E + D
Sbjct: 501 FEPNKEGDFVLRFFSEKKAGTQELDDQVQAILPDEQVLSEEEI-------------DENF 547
Query: 363 AALRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMDYDQ 542
AL F Q+AG+D+EI EL+ ILN K D + GFS+E+ +SMV +MD D
Sbjct: 548 KAL---FRQLAGEDMEISVRELRTILNRIISKHKD---LRTKGFSLESCRSMVNLMDRDG 601
Query: 543 SGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNSLVM 722
+GKLG EF +LW +R + F+KFD DKSG+ ++YE+R+ + S GF+L+ K+ ++
Sbjct: 602 NGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLFELIIT 661
Query: 723 RFANKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFDQDTFIQ 866
R++ + + FD+++ C VRL+T+F +K+ D FD ++Q
Sbjct: 662 RYSEPDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTFDLFKWLQ 709
>sp|P06815|CAN1_RABIT Calpain-1 catalytic subunit (Calpain-1 large subunit)
(Calcium-activated neutral proteinase 1) (CANP 1)
(Calpain mu-type) (muCANP) (Micromolar-calpain)
Length = 302
Score = 204 bits (520), Expect = 2e-52
Identities = 119/289 (41%), Positives = 171/289 (59%), Gaps = 5/289 (1%)
Frame = +3
Query: 15 TIGYAIYQLKDENQGP----LDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIVPS 182
TIG+A+Y++ E G L +FF NAS A++ FINLREV R +LPPG YV+VPS
Sbjct: 28 TIGFAVYEVpreLVGQPALHLKRDFFLANASRARSEQFINLREVSTRFRLPPGEYVVVPS 87
Query: 183 TFEPNQEAAFLMRIFSEKPYESGELDEQT-AMVPTESSPEANKTATSVPAKAITPADDAQ 359
TFEPN+E F++R FSEK + ELD+Q A +P E A + D
Sbjct: 88 TFEPNKEGDFVLRFFSEKRAGTQELDDQIQANLPDEQVLSAEEI-------------DEN 134
Query: 360 IAALRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMDYD 539
AL F Q+AG+DLEI ELQ ILN K D + GFS+E+ +SMV +MD D
Sbjct: 135 FKAL---FRQLAGEDLEISVRELQTILNRITSKHKD---LRTKGFSMESCRSMVNLMDRD 188
Query: 540 QSGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNSLV 719
+GKLG EF +LW +R + F+KFD DKSG+ ++YE+R+ + S GF+L+ K+ ++
Sbjct: 189 GNGKLGLVEFNILWNRIRNYLAIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELII 248
Query: 720 MRFANKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFDQDTFIQ 866
R++ + + FD+++ C VRL+T+F +K+ D FD ++Q
Sbjct: 249 TRYSEPDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTFDLFKWLQ 297
>sp|Q9GLG7|CAN3_MACFA Calpain-3 (Calpain L3) (Calpain p94) (Calcium-activated neutral
proteinase 3) (CANP 3) (Muscle-specific calcium-activated
neutral protease 3) (Cn94)
Length = 815
Score = 204 bits (520), Expect = 2e-52
Identities = 116/300 (38%), Positives = 172/300 (57%), Gaps = 29/300 (9%)
Frame = +3
Query: 12 YTIGYAIYQLKDE---NQGPLDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIVPS 182
+TIG+AIY++ E N+ L +FF YNAS A++ ++IN+REV R +LPP YVIVPS
Sbjct: 500 FTIGFAIYEVPKEMHGNRQHLQKDFFLYNASRARSKTYINMREVSQRFRLPPSEYVIVPS 559
Query: 183 TFEPNQEAAFLMRIFSEKPYESGELDEQTAM--------------------VPTESSPEA 302
T+EP+QE F++R+FSEK S E++ ++ V ES
Sbjct: 560 TYEPHQEGEFILRVFSEKRNLSEEVENTISVDRPVPIIFVSDRANSNKELGVDQESEEGK 619
Query: 303 NKTA------TSVPAKAITPADDAQIAALRDSFNQIAGQDLEIDAYELQDILNTAFKKGA 464
KT+ + P + + + R+ F QIAG D+EI A EL+ +LNT K
Sbjct: 620 GKTSPDKQEQSPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICADELKKVLNTVVNKHK 679
Query: 465 DGKYFKFDGFSIETSKSMVAMMDYDQSGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNF 644
D K GF++E+ +SM+A+MD D SGKL EF LW ++ W++ FK +D D+SG
Sbjct: 680 D---LKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTI 736
Query: 645 NSYELRLCLNSVGFRLSNKILNSLVMRFANKEGLILFDDYILCCVRLKTIFETYKSQPHD 824
NSYE+R +N GF L+N++ + + MR+A+K I FD +I C VRL+ +F + + D
Sbjct: 737 NSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKD 796
>sp|O14815|CAN9_HUMAN Calpain-9 (Digestive tract-specific calpain) (nCL-4) (CG36 protein)
Length = 690
Score = 204 bits (519), Expect = 3e-52
Identities = 112/268 (41%), Positives = 168/268 (62%), Gaps = 2/268 (0%)
Frame = +3
Query: 15 TIGYAIYQLKDENQGPLDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIVPSTFEP 194
TIGYAIY+ D+++ L+ +FF+Y+AS A++ +FINLREV R KLPPG Y+++PSTFEP
Sbjct: 417 TIGYAIYECPDKDEH-LNKDFFRYHASRARSKTFINLREVSDRFKLPPGEYILIPSTFEP 475
Query: 195 NQEAAFLMRIFSEKPYESGELDEQTAMVPTESSPEANKTATSVPAKAITPADDA--QIAA 368
+QEA F +RIFSEK + ++D + PE K TP D +
Sbjct: 476 HQEADFCLRIFSEKKAITRDMDGNVDI----DLPEPPKP---------TPPDQETEEEQR 522
Query: 369 LRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMDYDQSG 548
R F Q+AG+D+E+ A EL+ +LN +K D KF S+ + K+++++MD +G
Sbjct: 523 FRALFEQVAGEDMEVTAEELEYVLNAVLQKKKD---IKFKKLSLISCKNIISLMDTSGNG 579
Query: 549 KLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNSLVMRF 728
KL FDEFKV W L+ W F +FD DKSG ++YELR L + GF+LS+ +L +V+R+
Sbjct: 580 KLEFDEFKVFWDKLKQWINLFLRFDADKSGTMSTYELRTALKAAGFQLSSHLLQLIVLRY 639
Query: 729 ANKEGLILFDDYILCCVRLKTIFETYKS 812
A++E + FDD++ C VRL+ +++
Sbjct: 640 ADEELQLDFDDFLNCLVRLENASRVFQA 667
>sp|Q9D805|CAN9_MOUSE Calpain-9 (Digestive tract-specific calpain) (nCL-4)
Length = 690
Score = 204 bits (519), Expect = 3e-52
Identities = 113/284 (39%), Positives = 175/284 (61%), Gaps = 1/284 (0%)
Frame = +3
Query: 15 TIGYAIYQLKDENQGPLDVNFFKYNASVAKAPSFINLREVCGRHKLPPGTYVIVPSTFEP 194
TIGYAIYQ D++ G L +FF+Y+AS+A++ +FINLREV R +LPPG Y+++PSTFEP
Sbjct: 417 TIGYAIYQCPDKD-GHLSRDFFRYHASLARSKTFINLREVSERFQLPPGDYILIPSTFEP 475
Query: 195 NQEAAFLMRIFSEKPYESGELDEQTAM-VPTESSPEANKTATSVPAKAITPADDAQIAAL 371
+QEA F +RIFSEK + +LDE + +P P + T ++ Q AL
Sbjct: 476 HQEADFCLRIFSEKRAVTRDLDENIDIDLPELPKPTPQEEETE---------EEQQFRAL 526
Query: 372 RDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMDYDQSGK 551
F ++AG+D+E+ A EL+ +LN +K KF S+ + ++++++MD +GK
Sbjct: 527 ---FQRVAGEDMEVSAEELEYVLNAVLQKKTA---LKFKRLSLLSCRNIISLMDTSGNGK 580
Query: 552 LGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNSLVMRFA 731
L F+EF+V W L+ W + F +FD DKSG +SYELR L + GF+L +L +V+R+A
Sbjct: 581 LEFEEFRVFWDKLKHWMDLFLQFDVDKSGTMSSYELRTALKAAGFQLGGHLLQLIVLRYA 640
Query: 732 NKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFDQDTFI 863
+++ + FDDY+ C VRL+ ++S + D + + FI
Sbjct: 641 DEDLQLDFDDYLNCLVRLENASRVFQSLSVKNKDFIHLNINEFI 684
>sp|P17655|CAN2_HUMAN Calpain-2 catalytic subunit (Calpain-2 large subunit)
(Calcium-activated neutral proteinase 2) (CANP 2)
(Calpain M-type) (M-calpain) (Millimolar-calpain)
(Calpain large polypeptide L2)
Length = 700
Score = 204 bits (518), Expect = 3e-52
Identities = 114/285 (40%), Positives = 169/285 (59%), Gaps = 4/285 (1%)
Frame = +3
Query: 6 EFYTIGYAIYQLKDENQGPLDV----NFFKYNASVAKAPSFINLREVCGRHKLPPGTYVI 173
+ +TIG+ IY++ +E G ++ NFF N + ++ +FINLREV R KLPPG Y++
Sbjct: 425 DMHTIGFGIYEVPEELSGQTNIHLSKNFFLTNRARERSDTFINLREVLNRFKLPPGEYIL 484
Query: 174 VPSTFEPNQEAAFLMRIFSEKPYESGELDEQTAMVPTESSPEANKTATSVPAKAITPADD 353
VPSTFEPN++ F +R+FSEK + +D++ EAN + I DD
Sbjct: 485 VPSTFEPNKDGDFCIRVFSEKKADYQAVDDEI---------EANLEEFDISEDDI---DD 532
Query: 354 AQIAALRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMD 533
R F Q+AG+D EI A+ELQ IL K D K DGFSIET K MV M+D
Sbjct: 533 G----FRRLFAQLAGEDAEISAFELQTILRRVLAKRQD---IKSDGFSIETCKIMVDMLD 585
Query: 534 YDQSGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNS 713
D SGKLG EF +LWT ++ +++ +++ D D+SG NSYE+R L GF++ ++
Sbjct: 586 SDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKMPCQLHQV 645
Query: 714 LVMRFANKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFD 848
+V RFA+ + +I FD+++ C VRL+T+F+ +K ++T D
Sbjct: 646 IVARFADDQLIIDFDNFVRCLVRLETLFKIFKQLDPENTGTIELD 690
>sp|Q9GLG1|CAN2_MACFA Calpain-2 catalytic subunit (Calpain-2 large subunit)
(Calcium-activated neutral proteinase 2) (CANP 2)
(Calpain M-type) (M-calpain) (Millimolar-calpain)
Length = 700
Score = 204 bits (518), Expect = 3e-52
Identities = 114/285 (40%), Positives = 169/285 (59%), Gaps = 4/285 (1%)
Frame = +3
Query: 6 EFYTIGYAIYQLKDENQGPLDV----NFFKYNASVAKAPSFINLREVCGRHKLPPGTYVI 173
+ +TIG+ IY++ +E G ++ NFF N + ++ +FINLREV R KLPPG Y++
Sbjct: 425 DMHTIGFGIYEVPEELSGQTNIHLSKNFFLTNRARERSDTFINLREVLNRFKLPPGEYIL 484
Query: 174 VPSTFEPNQEAAFLMRIFSEKPYESGELDEQTAMVPTESSPEANKTATSVPAKAITPADD 353
VPSTFEPN++ F +R+FSEK + +D++ EAN + I DD
Sbjct: 485 VPSTFEPNKDGDFCIRVFSEKKADYQAVDDEI---------EANLEEFDISEDDI---DD 532
Query: 354 AQIAALRDSFNQIAGQDLEIDAYELQDILNTAFKKGADGKYFKFDGFSIETSKSMVAMMD 533
R F Q+AG+D EI A+ELQ IL K D K DGFSIET K MV M+D
Sbjct: 533 G----FRRLFAQLAGEDAEISAFELQTILRRVLAKRQD---IKSDGFSIETCKIMVDMLD 585
Query: 534 YDQSGKLGFDEFKVLWTDLRLWKEAFKKFDQDKSGNFNSYELRLCLNSVGFRLSNKILNS 713
D SGKLG EF +LWT ++ +++ +++ D D+SG NSYE+R L GF++ ++
Sbjct: 586 SDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKMPCQLHQV 645
Query: 714 LVMRFANKEGLILFDDYILCCVRLKTIFETYKSQPHDSTDRAMFD 848
+V RFA+ + +I FD+++ C VRL+T+F+ +K ++T D
Sbjct: 646 IVARFADDQLIIDFDNFVRCLVRLETLFKIFKQLDPENTGTIELD 690
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,958,032
Number of Sequences: 369166
Number of extensions: 1807829
Number of successful extensions: 5249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5121
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)