Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I01
(379 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic 161 4e-40
sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 k... 161 5e-40
sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar oute... 161 5e-40
sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 k... 160 1e-39
sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 k... 158 3e-39
sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa... 157 7e-39
sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar ou... 154 6e-38
sp|Q9Y3P0|DYLL_HUMAN Putative dynein light chain protein DJ... 139 2e-33
sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic 139 3e-33
sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-st... 137 8e-33
>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic
Length = 89
Score = 161 bits (408), Expect = 4e-40
Identities = 75/87 (86%), Positives = 84/87 (96%)
Frame = +3
Query: 15 ERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRNF 194
+R+AVIKNADM+D+MQ+ AI+ ATQA+EK+NIEKDIAAYIKKEFDK +NPTWHCIVGRNF
Sbjct: 3 DRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62
Query: 195 GSYVTHETKHFIYFYLGQVAILLFKSG 275
GSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFKSG 89
>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 kDa dynein light chain) (DLC8)
(DLC8b)
sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic
sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic
Length = 89
Score = 161 bits (407), Expect = 5e-40
Identities = 74/88 (84%), Positives = 85/88 (96%)
Frame = +3
Query: 12 AERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRN 191
++R+AVIKNADM+++MQ+ A++ ATQAMEK+NIEKDIAAYIKKEFDK +NPTWHCIVGRN
Sbjct: 2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 192 FGSYVTHETKHFIYFYLGQVAILLFKSG 275
FGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89
>sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar outer arm
Length = 89
Score = 161 bits (407), Expect = 5e-40
Identities = 74/88 (84%), Positives = 84/88 (95%)
Frame = +3
Query: 12 AERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRN 191
+ER+AVIKNADM ++MQ+ A++ ATQA+EKFNIEKDIAAYIKKEFDK +NPTWHCIVGRN
Sbjct: 2 SERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 192 FGSYVTHETKHFIYFYLGQVAILLFKSG 275
FGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAVLLFKSG 89
>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (Cut
up protein)
Length = 89
Score = 160 bits (404), Expect = 1e-39
Identities = 73/88 (82%), Positives = 85/88 (96%)
Frame = +3
Query: 12 AERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRN 191
++R+AVIKNADM++EMQ+ A++ ATQA+EK+NIEKDIAAYIKKEFDK +NPTWHCIVGRN
Sbjct: 2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 192 FGSYVTHETKHFIYFYLGQVAILLFKSG 275
FGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKSG 89
>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 kDa dynein light chain)
Length = 89
Score = 158 bits (400), Expect = 3e-39
Identities = 72/88 (81%), Positives = 85/88 (96%)
Frame = +3
Query: 12 AERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRN 191
++R+AVIKNADM++EMQ+ A++ ATQA+EK+NIEKDIAA+IKKEFDK +NPTWHCIVGRN
Sbjct: 2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRN 61
Query: 192 FGSYVTHETKHFIYFYLGQVAILLFKSG 275
FGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKSG 89
>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN) (mPIN)
sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic
sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic
sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
Length = 89
Score = 157 bits (397), Expect = 7e-39
Identities = 72/87 (82%), Positives = 83/87 (95%)
Frame = +3
Query: 15 ERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRNF 194
+R+AVIKNADM++EMQ+ ++ ATQA+EK+NIEKDIAA+IKKEFDK +NPTWHCIVGRNF
Sbjct: 3 DRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNF 62
Query: 195 GSYVTHETKHFIYFYLGQVAILLFKSG 275
GSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFKSG 89
>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm
Length = 91
Score = 154 bits (389), Expect = 6e-38
Identities = 72/85 (84%), Positives = 80/85 (94%)
Frame = +3
Query: 21 QAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRNFGS 200
+AVIKNADM++EMQ A++ ATQA+EK+NIEKDIAAYIKKEFD+ NPTWHCIVGRNFGS
Sbjct: 7 KAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGS 66
Query: 201 YVTHETKHFIYFYLGQVAILLFKSG 275
YVTHETKHFIYFYLGQVAILLFKSG
Sbjct: 67 YVTHETKHFIYFYLGQVAILLFKSG 91
>sp|Q9Y3P0|DYLL_HUMAN Putative dynein light chain protein DJ8B22.1
Length = 89
Score = 139 bits (351), Expect = 2e-33
Identities = 64/86 (74%), Positives = 76/86 (88%)
Frame = +3
Query: 18 RQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRNFG 197
R+ +IKNADM++EMQ+ ++ A QA+EK+NIEKDIAA++KKEFDK NPTWHCIVGRNFG
Sbjct: 4 RETMIKNADMSEEMQQDSVECAIQALEKYNIEKDIAAHLKKEFDKKNNPTWHCIVGRNFG 63
Query: 198 SYVTHETKHFIYFYLGQVAILLFKSG 275
SY+T E KHFIYFYL QVAILLFKSG
Sbjct: 64 SYMTREIKHFIYFYLDQVAILLFKSG 89
>sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic
Length = 85
Score = 139 bits (349), Expect = 3e-33
Identities = 64/84 (76%), Positives = 75/84 (89%)
Frame = +3
Query: 24 AVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRNFGSY 203
AVIK DM+++MQ+ AI+ A QAMEKF IEKDIAA+IK+EFDK F+PTWHCIVGRNFGS+
Sbjct: 2 AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61
Query: 204 VTHETKHFIYFYLGQVAILLFKSG 275
VTHE++HFIYFYLG VA LLFKSG
Sbjct: 62 VTHESRHFIYFYLGTVAFLLFKSG 85
>sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-stimulating antigen SM10)
Length = 89
Score = 137 bits (345), Expect = 8e-33
Identities = 61/87 (70%), Positives = 76/87 (87%)
Frame = +3
Query: 15 ERQAVIKNADMTDEMQEAAINYATQAMEKFNIEKDIAAYIKKEFDKTFNPTWHCIVGRNF 194
ER+AVIKNADM ++MQE A++ A A++K+ IEKD+AAYIKKEFD+ +NP WHCIVG++F
Sbjct: 3 ERKAVIKNADMHEDMQETAVHTAAAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHF 62
Query: 195 GSYVTHETKHFIYFYLGQVAILLFKSG 275
GSYVTHET+HFIYFYL + A LLFKSG
Sbjct: 63 GSYVTHETQHFIYFYLQERAFLLFKSG 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,733,701
Number of Sequences: 369166
Number of extensions: 661448
Number of successful extensions: 1500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)