Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H18
(801 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P0ABC9|BETT_ECOLI High-affinity choline transport protei... 32 2.6
sp|Q06412|TUS1_YEAST Rho1 guanine nucleotide exchange facto... 31 3.4
sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b56... 31 4.5
sp|O94485|YC74_SCHPO Hypothetical protein C417.04 in chromo... 30 7.7
sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 (Cytoch... 30 7.7
>sp|P0ABC9|BETT_ECOLI High-affinity choline transport protein
sp|P0ABD0|BETT_ECO57 High-affinity choline transport protein
Length = 677
Score = 31.6 bits (70), Expect = 2.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 219 YVTFFIGFTIMMYFFDWRHIFPIKFFNTWTLFF 121
YV F+G T+ + FD P+++ N WTLFF
Sbjct: 295 YVNRFMGMTLNSFAFDR----PVEWMNNWTLFF 323
>sp|Q06412|TUS1_YEAST Rho1 guanine nucleotide exchange factor TUS1 (TOR unique function
suppressor protein 1)
Length = 1307
Score = 31.2 bits (69), Expect = 3.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 151 YRKDMPPIKEIHHYRESNKKSYVTYCERYLSNSDCTVGTSYHDVV 285
Y K M + EI + + NK +VT+ + ++ + T YHDV+
Sbjct: 563 YAKAMATVHEIIMWEKKNKTKFVTWLKEIDNSVEITRSKMYHDVI 607
>sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit (Succinate
dehydrogenase, subunit III)
Length = 144
Score = 30.8 bits (68), Expect = 4.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 600 DFYYSILRFNSIRYTLSRL*SFIFYLIDYVYILFIHLNL 716
+F+ S F SI YTL++ F+F I + +LFI +L
Sbjct: 64 NFHLSSYAFYSIAYTLNQYSGFLFIAISFFLLLFIFYHL 102
>sp|O94485|YC74_SCHPO Hypothetical protein C417.04 in chromosome III
Length = 180
Score = 30.0 bits (66), Expect = 7.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 447 KLKGFKPEPDLRIEIKKLVCAQSTGRMIRRFLNNLTISYSFTII 316
K K F RIE+KK C S G + F +LT S +I+
Sbjct: 8 KSKAFHLLSSKRIEVKKSFCCSSEGPLFYFFFGSLTFSIEVSIL 51
>sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 549
Score = 30.0 bits (66), Expect = 7.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 383 WAHTNFLISI-LKSGSGLNPLSF*INPVSCQNCLQLMYYYLLNQFYLVLPVQIVIMFVFL 559
WAH F++ + + S + +S I +C +Y +L + V VIMF+F+
Sbjct: 290 WAHHMFVVGMDVDSRAYFGGVSILIGLPTCVKLFNWIYSFLYTDMIITFEVYFVIMFIFM 349
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,961,493
Number of Sequences: 369166
Number of extensions: 1428142
Number of successful extensions: 3250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3247
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)