Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H17
(470 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 86 6e-17
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 81 1e-15
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 73 3e-13
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 72 8e-13
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 69 4e-12
sp|Q8JI39|CRVP_TRIFL Triflin precursor 69 5e-12
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 69 7e-12
sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor 69 7e-12
sp|Q8JI40|CRVP_AGKHA Ablomin precursor 68 1e-11
sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor 68 1e-11
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 85.5 bits (210), Expect = 6e-17
Identities = 40/74 (54%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTG-GSFAYGWLFICNYGPAGNFNDEAPYEVGAAC 179
VCGHYTQV WA SY VGCA C + +G + + G FICNYGP GN+ PY+ GA C
Sbjct: 134 VCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGATC 192
Query: 180 SKCPKGTSCKNNLC 221
S CP C +NLC
Sbjct: 193 SACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 81.3 bits (199), Expect = 1e-15
Identities = 39/73 (53%), Positives = 44/73 (60%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDEAPYEVGAACS 182
VCGHYTQV WA SY +GCA C G FIC+YGPAGN+ PY+ GA CS
Sbjct: 132 VCGHYTQVVWADSYKLGCAVQLCPN--------GANFICDYGPAGNY-PTWPYKQGATCS 182
Query: 183 KCPKGTSCKNNLC 221
CPK C N+LC
Sbjct: 183 DCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 73.2 bits (178), Expect = 3e-13
Identities = 35/75 (46%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAA 176
V GHYTQ+ W KSY +GCAA C S Y + F+C Y PAGNF PY G
Sbjct: 124 VTGHYTQIVWYKSYRIGCAAAYCP-----SSPYSYFFVCQYCPAGNFIGKTATPYTSGTP 178
Query: 177 CSKCPKGTSCKNNLC 221
C CP + C N LC
Sbjct: 179 CGDCP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 71.6 bits (174), Expect = 8e-13
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAA 176
V GHYTQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY G
Sbjct: 130 VTGHYTQIVWYKSYLVGCAAAYCP-----SSLYNYFYVCQYCPAGNIQGSTSTPYASGPT 184
Query: 177 CSKCPKGTSCKNNLC 221
C+ CP ++C N LC
Sbjct: 185 CADCP--SNCDNGLC 197
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 69.3 bits (168), Expect = 4e-12
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAA 176
V GHYTQ+ W KSY +GCAA C S Y + ++C Y PAGN PY G
Sbjct: 131 VVGHYTQIVWYKSYRIGCAAAYCP-----SAEYSYFYVCQYCPAGNMIGKTATPYTSGPP 185
Query: 177 CSKCPKGTSCKNNLC 221
C CP + C N LC
Sbjct: 186 CGDCP--SDCDNGLC 198
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 68.9 bits (167), Expect = 5e-12
Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAA 176
V GHYTQ+ W KSY GCAA C S Y + ++C Y PAGN PY+ G
Sbjct: 131 VIGHYTQIVWYKSYRAGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGPP 185
Query: 177 CSKCPKGTSCKNNLC 221
C CP + C N LC
Sbjct: 186 CGDCP--SDCDNGLC 198
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 68.6 bits (166), Expect = 7e-12
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAA 176
V GHYTQV W KSY +GCA+ C +L++C Y PAGN PY+ G
Sbjct: 131 VIGHYTQVVWYKSYLIGCASAKCSSSK-------YLYVCQYCPAGNIRGSIATPYKSGPP 183
Query: 177 CSKCPKGTSCKNNLC 221
C+ CP ++C N LC
Sbjct: 184 CADCP--SACVNKLC 196
>sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor
Length = 240
Score = 68.6 bits (166), Expect = 7e-12
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAA 176
V GH+TQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY+ G
Sbjct: 131 VIGHFTQIVWYKSYLVGCAAAYCP-----SSEYSYFYVCQYCPAGNIIGKIATPYKSGPP 185
Query: 177 CSKCPKGTSCKNNLC 221
C CP ++C N LC
Sbjct: 186 CGDCP--SACVNGLC 198
>sp|Q8JI40|CRVP_AGKHA Ablomin precursor
Length = 240
Score = 67.8 bits (164), Expect = 1e-11
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAA 176
V GH+TQ+ W KSY GCAA C S Y + ++C Y PAGN + PY G
Sbjct: 131 VSGHFTQIVWYKSYRAGCAAAYCP-----SSEYSYFYVCQYCPAGNMRGKTATPYTSGPP 185
Query: 177 CSKCPKGTSCKNNLC 221
C CP ++C N LC
Sbjct: 186 CGDCP--SACDNGLC 198
>sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor
Length = 240
Score = 67.8 bits (164), Expect = 1e-11
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 VCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAA 176
V GH++QV W KSY +GCAA C S Y + ++C Y PAGN PY+ G
Sbjct: 131 VTGHFSQVVWYKSYRIGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGPP 185
Query: 177 CSKCPKGTSCKNNLC 221
C CP ++C N LC
Sbjct: 186 CGDCP--SACDNGLC 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,692,211
Number of Sequences: 369166
Number of extensions: 934113
Number of successful extensions: 2756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2663
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)