Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H04
(797 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3) 119 1e-26
sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4) 119 1e-26
sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E) 111 2e-24
sp|Q920J3|CORO6_RAT Coronin-6 111 2e-24
sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57)... 109 1e-23
sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57)... 109 1e-23
sp|Q9WUM3|COR1B_MOUSE Coronin-1B (Coronin-2) 107 4e-23
sp|Q9BR76|CO1B_HUMAN Coronin-1B (Coronin-2) 107 4e-23
sp|Q9XS70|COR1B_RABIT Coronin-1B (Coroninse) (Coronin-like ... 106 6e-23
sp|Q92176|COR1A_BOVIN Coronin-1A (Coronin-like protein p57)... 106 8e-23
>sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3)
Length = 474
Score = 119 bits (297), Expect = 1e-26
Identities = 63/109 (57%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G+MPKRG++VN+ EIAR +KLH + CE I TVPRKS+L+QDDLYPDTAG A
Sbjct: 313 PQRGMGYMPKRGLDVNKCEIARFFKLHERK-CEPIIMTVPRKSDLFQDDLYPDTAGPEAA 371
Query: 182 LSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAIKSKITDQKAPA 325
L AEEWFEG N +PIL+S+K G+ K R K +K I D K A
Sbjct: 372 LEAEEWFEGKNADPILISLKHGYIPGKNRDLK----VVKKNILDSKPAA 416
>sp|Q9ULV4|COR1C_HUMAN Coronin-1C (Coronin-3) (hCRNN4)
Length = 474
Score = 119 bits (297), Expect = 1e-26
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G+MPKRG++VN+ EIAR +KLH + CE I TVPRKS+L+QDDLYPDTAG A
Sbjct: 313 PQRGMGYMPKRGLDVNKCEIARFFKLHERK-CEPIIMTVPRKSDLFQDDLYPDTAGPEAA 371
Query: 182 LSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAI-KSKITDQK 316
L AEEWFEG N +PIL+S+K G+ K R K VK I SK T K
Sbjct: 372 LEAEEWFEGKNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANK 418
>sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E)
Length = 471
Score = 111 bits (278), Expect = 2e-24
Identities = 56/108 (51%), Positives = 74/108 (68%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G+MPKRG++V++ EIAR YKLH + CE I TVPRKS+L+QDDLYPDT G PA
Sbjct: 314 PQRGMGFMPKRGLDVSKCEIARFYKLHERK-CEPIIMTVPRKSDLFQDDLYPDTPGPEPA 372
Query: 182 LSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPA 325
L A+EW G + P+L+S+K+G+ + V K I D + PA
Sbjct: 373 LEADEWLSGQDAEPVLISLKEGYVPPKHRELRV---TKRNILDVRPPA 417
>sp|Q920J3|CORO6_RAT Coronin-6
Length = 472
Score = 111 bits (278), Expect = 2e-24
Identities = 56/108 (51%), Positives = 74/108 (68%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G+MPKRG++V++ EIAR YKLH + CE I TVPRKS+L+QDDLYPDT G PA
Sbjct: 314 PQRGMGFMPKRGLDVSKCEIARFYKLHERK-CEPIVMTVPRKSDLFQDDLYPDTPGPEPA 372
Query: 182 LSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQKAPA 325
L A+EW G + P+L+S+K+G+ + V K I D + PA
Sbjct: 373 LEADEWLSGQDAEPVLISLKEGYVPPKHREFRV---TKRNILDVRPPA 417
>sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 109 bits (272), Expect = 1e-23
Identities = 51/82 (62%), Positives = 65/82 (79%)
Frame = +2
Query: 5 QRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPAL 184
QRG+G+MPKRG+ VN+ EIAR YKLH + CE I TVPRKS+L+Q+DLYP TAG PAL
Sbjct: 316 QRGMGYMPKRGLEVNKCEIARFYKLHERR-CEPIAMTVPRKSDLFQEDLYPPTAGPDPAL 374
Query: 185 SAEEWFEGTNNNPILVSMKDGF 250
+AEEW G + P+L+S+KDG+
Sbjct: 375 TAEEWLGGRDAGPLLISLKDGY 396
>sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 109 bits (272), Expect = 1e-23
Identities = 51/82 (62%), Positives = 65/82 (79%)
Frame = +2
Query: 5 QRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPAL 184
QRG+G+MPKRG+ VN+ EIAR YKLH + CE I TVPRKS+L+Q+DLYP TAG PAL
Sbjct: 316 QRGMGYMPKRGLEVNKCEIARFYKLHERK-CEPIAMTVPRKSDLFQEDLYPPTAGPDPAL 374
Query: 185 SAEEWFEGTNNNPILVSMKDGF 250
+AEEW G + P+L+S+KDG+
Sbjct: 375 TAEEWLGGRDAGPLLISLKDGY 396
>sp|Q9WUM3|COR1B_MOUSE Coronin-1B (Coronin-2)
Length = 484
Score = 107 bits (267), Expect = 4e-23
Identities = 52/105 (49%), Positives = 76/105 (72%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G MPKRG+ V++ EIAR YKLH + CE I TVPRKS+L+QDDLYPDTAG A
Sbjct: 315 PQRGMGSMPKRGLEVSKCEIARFYKLHERK-CEPIVMTVPRKSDLFQDDLYPDTAGPEAA 373
Query: 182 LSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQK 316
L AE+W G + NPIL+S+++ + + ++ +K + ++ ++D +
Sbjct: 374 LEAEDWVSGQDANPILISLREAYVPSK--QRDLKVSRRNVLSDSR 416
>sp|Q9BR76|CO1B_HUMAN Coronin-1B (Coronin-2)
Length = 489
Score = 107 bits (267), Expect = 4e-23
Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G MPKRG+ V++ EIAR YKLH + CE I TVPRKS+L+QDDLYPDTAG A
Sbjct: 315 PQRGMGSMPKRGLEVSKCEIARFYKLHERK-CEPIVMTVPRKSDLFQDDLYPDTAGPEAA 373
Query: 182 LSAEEWFEGTNNNPILVSMKDGF-KTKERTRKPVKAAIKSKITDQKAP 322
L AEEW G + +PIL+S+++ + +K+R K + + S AP
Sbjct: 374 LEAEEWVSGRDADPILISLREAYVPSKQRDLKISRRNVLSDSRPAMAP 421
>sp|Q9XS70|COR1B_RABIT Coronin-1B (Coroninse) (Coronin-like protein pp66)
Length = 486
Score = 106 bits (265), Expect = 6e-23
Identities = 51/105 (48%), Positives = 75/105 (71%)
Frame = +2
Query: 2 PQRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPA 181
PQRG+G MPKRG+ V++ EIAR YKLH + CE I TVPRKS+L+QDDLYPDTAG A
Sbjct: 315 PQRGVGSMPKRGLEVSKCEIARFYKLHERK-CEPIVMTVPRKSDLFQDDLYPDTAGPEAA 373
Query: 182 LSAEEWFEGTNNNPILVSMKDGFKTKERTRKPVKAAIKSKITDQK 316
L AEEW G + P+L+S+++ + + ++ +K + ++ ++D +
Sbjct: 374 LEAEEWVSGRDAGPVLISLREAYVPSK--QRDLKVSRRNVLSDSR 416
>sp|Q92176|COR1A_BOVIN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 106 bits (264), Expect = 8e-23
Identities = 50/82 (60%), Positives = 64/82 (78%)
Frame = +2
Query: 5 QRGIGWMPKRGVNVNQNEIARCYKLHNKNLCEVIPFTVPRKSELYQDDLYPDTAGDVPAL 184
QRG+G+MPKRG+ VN+ EIAR YKLH + CE I TVPRKS+L+Q+DLYP TAG AL
Sbjct: 316 QRGMGYMPKRGLEVNKCEIARFYKLHERK-CEPIAMTVPRKSDLFQEDLYPPTAGPDAAL 374
Query: 185 SAEEWFEGTNNNPILVSMKDGF 250
+AEEW G + P+L+S+KDG+
Sbjct: 375 TAEEWLGGRDAGPLLISLKDGY 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,978,469
Number of Sequences: 369166
Number of extensions: 1215601
Number of successful extensions: 3343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3318
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)