Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H03
(277 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16891|IMMT_HUMAN Mitochondrial inner membrane protein (... 30 2.3
sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein (... 29 3.0
sp|Q9KF53|PUR9_BACHD Bifunctional purine biosynthesis prote... 29 3.0
sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B (RNA... 29 3.9
sp|P24088|YRF11_YEAST Y'helicase protein 1 copies 1/5/8 28 6.6
sp|P38900|YH19_YEAST Hypothetical 70.1 kDa protein in PUR5 ... 28 6.6
sp|O13559|YRF14_YEAST Y'helicase protein 1 copy 4 28 6.6
sp|P53345|YRF13_YEAST Y'helicase protein 1 copies 3/7 28 6.6
sp|P53819|YRF16_YEAST Y'helicase protein 1 copy 6 28 6.6
sp|P40105|YRF12_YEAST Y'helicase protein 1 copy 2 28 6.6
>sp|Q16891|IMMT_HUMAN Mitochondrial inner membrane protein (Mitofilin) (p87/89)
(Proliferation-inducing gene 4 protein)
Length = 758
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 207 HHQAIISVENENRIRSERDSTKNE--EELQPMAVALVEHSVDVV 82
HH++ I E + +I RD+ +NE +L+ A A +H DV+
Sbjct: 455 HHRSEIQAEQDRKIEEVRDAMENEMRTQLRRQAAAHTDHLRDVL 498
>sp|Q8CAQ8|IMMT_MOUSE Mitochondrial inner membrane protein (Mitofilin)
Length = 757
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 207 HHQAIISVENENRIRSERDSTKNE--EELQPMAVALVEHSVDVV 82
HH++ I E + ++ RD+ +NE +L+ A A +H DV+
Sbjct: 454 HHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVL 497
>sp|Q9KF53|PUR9_BACHD Bifunctional purine biosynthesis protein purH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 511
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 150 STKNEEELQPMAVALVEHSVDVVGQALVGSALVE 49
S N+E + P A ALVEH V++V AL E
Sbjct: 8 SVSNKEGIVPFAKALVEHEVEIVSTGGTKRALQE 41
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B (RNA-binding motif protein 15B)
Length = 563
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 222 GYYHYHHQAIISVENENRIRSERDSTKNEEELQPM 118
G++H+HH+A S + SER+ E E +P+
Sbjct: 337 GHHHHHHEAADSSHGKKARDSERNHRTTEAEPKPL 371
>sp|P24088|YRF11_YEAST Y'helicase protein 1 copies 1/5/8
Length = 1796
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 23 SECSAATMGSTNADPTSACPTTSTECSTNAT 115
S SA T ST+++ TSA T ST STNAT
Sbjct: 1348 SNTSATTTESTDSN-TSATTTASTNSSTNAT 1377
>sp|P38900|YH19_YEAST Hypothetical 70.1 kDa protein in PUR5 3'region
Length = 624
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 23 SECSAATMGSTNADPTSACPTTSTECSTNAT 115
S SA T ST+++ TSA T ST STNAT
Sbjct: 176 SNTSATTTESTDSN-TSATTTASTNSSTNAT 205
>sp|O13559|YRF14_YEAST Y'helicase protein 1 copy 4
Length = 1382
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 23 SECSAATMGSTNADPTSACPTTSTECSTNAT 115
S SA T ST+++ TSA T ST STNAT
Sbjct: 934 SNTSATTTESTDSN-TSATTTASTNSSTNAT 963
>sp|P53345|YRF13_YEAST Y'helicase protein 1 copies 3/7
Length = 1859
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 23 SECSAATMGSTNADPTSACPTTSTECSTNAT 115
S SA T ST+++ TSA T ST STNAT
Sbjct: 1412 SNTSATTTESTDSN-TSATTTASTNSSTNAT 1441
>sp|P53819|YRF16_YEAST Y'helicase protein 1 copy 6
Length = 1859
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 23 SECSAATMGSTNADPTSACPTTSTECSTNAT 115
S SA T ST+++ TSA T ST STNAT
Sbjct: 1412 SNTSATTTESTDSN-TSATTTASTNSSTNAT 1441
>sp|P40105|YRF12_YEAST Y'helicase protein 1 copy 2
Length = 1681
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 23 SECSAATMGSTNADPTSACPTTSTECSTNAT 115
S SA T ST+++ TSA T ST STNAT
Sbjct: 1234 SNTSATTTESTDSN-TSATTTASTNSSTNAT 1263
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,784,714
Number of Sequences: 369166
Number of extensions: 413070
Number of successful extensions: 1900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)