Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_G23
(311 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 42 4e-04
sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A 40 0.001
sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C 39 0.003
sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B 39 0.003
sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 39 0.003
sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 39 0.004
sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0 37 0.011
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 35 0.054
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 34 0.092
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 31 1.0
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0
Length = 320
Score = 42.0 bits (97), Expect = 4e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K V+ ++V TDY+ EA+ +KEYLKD +KF
Sbjct: 243 MFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278
>sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A
Length = 317
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K V+ +++ T+Y+ +AE +KE+LKD TKF
Sbjct: 243 MFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278
>sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C
Length = 323
Score = 39.3 bits (90), Expect = 0.003
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K + ++V TDY +AE +KE+LKD +KF
Sbjct: 242 MFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277
>sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B
Length = 320
Score = 39.3 bits (90), Expect = 0.003
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K + ++V T+Y +AE +KEYLKD +KF
Sbjct: 242 MFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0
Length = 322
Score = 39.3 bits (90), Expect = 0.003
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K V+ ++V T+Y+ +A+ +KEYLKD +KF
Sbjct: 243 VFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0
Length = 319
Score = 38.9 bits (89), Expect = 0.004
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K V+ ++V TDY+ A+ IKEYLKD +KF
Sbjct: 243 MFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278
>sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0
Length = 319
Score = 37.4 bits (85), Expect = 0.011
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 39 LFANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
+F N K V+ ++V T+Y+ A+ IKEYLKD +KF
Sbjct: 243 MFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 35.0 bits (79), Expect = 0.054
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 45 ANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
AN ++ ++G++ VTD + KEAE IK ++ D +KF
Sbjct: 242 ANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 34.3 bits (77), Expect = 0.092
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 45 ANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
AN K ++ ++ T+ KEA IKEY+KD +KF
Sbjct: 242 ANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 45 ANTIKAVIGLSVVTDYNLKEAEGIKEYLKDLTKF 146
AN K ++ ++ T+ K+A IKE++KD +KF
Sbjct: 242 ANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,244,701
Number of Sequences: 369166
Number of extensions: 295124
Number of successful extensions: 851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)