Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_G21
(347 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PQX7|Y166_UREPA Hypothetical protein UU166 32 0.45
sp|P31870|DPOL_HBVDM P protein [Includes: DNA-directed DNA ... 28 5.0
sp|P03157|DPOL_HBVDR P protein [Includes: DNA-directed DNA ... 28 5.0
sp|Q49X45|UPPS_STAS1 Undecaprenyl pyrophosphate synthetase ... 28 6.5
sp|P17100|DPOL_HBVW9 P protein [Includes: DNA-directed DNA ... 28 8.5
>sp|Q9PQX7|Y166_UREPA Hypothetical protein UU166
Length = 944
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 214 FFSFWHLKARNSKALKAYCSTSTFTKKTYLSMVLRD*ATEDSKAISDRSNFH-YYFYPFH 38
F + W++KA N + + + T+ K L+ + +D A D + ++NF YYF +
Sbjct: 66 FSTVWNIKASNEPIIAYWDKSFTYNFKGSLNYISKDYARIDPSNTTLKNNFKPYYFQAWV 125
Query: 37 KNQKAQNSL 11
+N N++
Sbjct: 126 QNYSQANNV 134
>sp|P31870|DPOL_HBVDM P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 842
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 226 STGHFFSFWHLKARNSKALKAYCST 152
S G FS W L+ RNSK YC T
Sbjct: 316 SEGPIFSSWWLQFRNSKPCSDYCLT 340
>sp|P03157|DPOL_HBVDR P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 843
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 226 STGHFFSFWHLKARNSKALKAYCST 152
S G FS W L+ RNSK YC T
Sbjct: 316 SEGPIFSCWWLQFRNSKPCSDYCLT 340
>sp|Q49X45|UPPS_STAS1 Undecaprenyl pyrophosphate synthetase (UPP synthetase)
(Di-trans,poly-cis-decaprenylcistransferase)
(Undecaprenyl diphosphate synthase) (UDS)
Length = 254
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 246 KHVKKNVVQGISSAFGT*KHEIPKH*KLIV 157
K +KKN Q I S FG H IP+H +I+
Sbjct: 4 KLIKKNKNQPIQSEFGLDLHNIPEHVAIIM 33
>sp|P17100|DPOL_HBVW9 P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 845
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 226 STGHFFSFWHLKARNSKALKAYC 158
S G FS W L+ RNSK YC
Sbjct: 318 SQGSVFSCWWLQFRNSKPCSEYC 340
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,993,748
Number of Sequences: 369166
Number of extensions: 630611
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)