Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_G13
(382 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q922R8|PDIA6_MOUSE Protein disulfide-isomerase A6 precur... 111 4e-25
sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 precurso... 110 8e-25
sp|P38660|PDIA6_MESAU Protein disulfide-isomerase A6 precur... 105 3e-23
sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 precur... 105 4e-23
sp|Q5R6T1|PDIA6_PONPY Protein disulfide-isomerase A6 precursor 105 4e-23
sp|Q11067|PDIA6_CAEEL Probable protein disulfide-isomerase ... 100 2e-21
sp|O54943|PER2_MOUSE Period circadian protein 2 (mPER2) 31 1.0
sp|Q9Z301|PER2_RAT Period circadian protein 2 (rPER2) 31 1.0
sp|P55871|IF2B_MALDO Eukaryotic translation initiation fact... 29 3.8
sp|O15354|GPR37_HUMAN Probable G-protein coupled receptor 3... 28 5.0
>sp|Q922R8|PDIA6_MOUSE Protein disulfide-isomerase A6 precursor (Thioredoxin
domain-containing protein 7)
Length = 440
Score = 111 bits (278), Expect = 4e-25
Identities = 50/89 (56%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 GGFGYPALVVVNVRKMKYATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDP 181
GGFGYPA+ +N RKMK+A L G FS+ GI +F+R++S GRGSTA + G P ITP +P
Sbjct: 352 GGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITpreP 411
Query: 182 WDGKDGEMPKEEEIDLSELGIEE-PKSEL 265
WDGKDGE+P E++IDLS++ +++ K EL
Sbjct: 412 WDGKDGELPVEDDIDLSDVELDDLEKDEL 440
>sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 precursor (Protein disulfide
isomerase P5) (Calcium-binding protein 1) (CaBP1)
(Thioredoxin domain-containing protein 7)
Length = 440
Score = 110 bits (276), Expect = 8e-25
Identities = 50/89 (56%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 GGFGYPALVVVNVRKMKYATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDP 181
GGFGYPA+ +N RKMK+A L G FS+ GI +F+R++S GRGSTA + G P ITP +P
Sbjct: 352 GGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITpreP 411
Query: 182 WDGKDGEMPKEEEIDLSELGIEE-PKSEL 265
WDGKDGE+P E++IDLS++ +++ K EL
Sbjct: 412 WDGKDGELPVEDDIDLSDVELDDLEKDEL 440
>sp|P38660|PDIA6_MESAU Protein disulfide-isomerase A6 precursor (Protein disulfide
isomerase P5)
Length = 439
Score = 105 bits (262), Expect = 3e-23
Identities = 48/89 (53%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 GGFGYPALVVVNVRKMKYATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDP 181
GGFGYPA+ +N RKMK+A L G FS+ GI +F+R++S GR STA + G PAIT +P
Sbjct: 351 GGFGYPAMARINARKMKFALLKGSFSEQGINEFLRELSFGRASTAPVGGGSFPAITAREP 410
Query: 182 WDGKDGEMPKEEEIDLSELGIEE-PKSEL 265
WDG+DGE+P E++IDLS++ +++ K EL
Sbjct: 411 WDGRDGELPVEDDIDLSDVELDDLEKDEL 439
>sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 precursor (Protein disulfide
isomerase P5) (Thioredoxin domain-containing protein 7)
Length = 440
Score = 105 bits (261), Expect = 4e-23
Identities = 44/83 (53%), Positives = 63/83 (75%)
Frame = +2
Query: 2 GGFGYPALVVVNVRKMKYATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDP 181
GGFGYPA+ +N RKMK+A L G FS+ GI +F+R++S GRGSTA + G P I +P
Sbjct: 352 GGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREP 411
Query: 182 WDGKDGEMPKEEEIDLSELGIEE 250
WDG+DGE+P E++IDLS++ +++
Sbjct: 412 WDGRDGELPVEDDIDLSDVELDD 434
>sp|Q5R6T1|PDIA6_PONPY Protein disulfide-isomerase A6 precursor
Length = 440
Score = 105 bits (261), Expect = 4e-23
Identities = 44/83 (53%), Positives = 63/83 (75%)
Frame = +2
Query: 2 GGFGYPALVVVNVRKMKYATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDP 181
GGFGYPA+ +N RKMK+A L G FS+ GI +F+R++S GRGSTA + G P I +P
Sbjct: 352 GGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREP 411
Query: 182 WDGKDGEMPKEEEIDLSELGIEE 250
WDG+DGE+P E++IDLS++ +++
Sbjct: 412 WDGRDGELPVEDDIDLSDVELDD 434
>sp|Q11067|PDIA6_CAEEL Probable protein disulfide-isomerase A6 precursor
Length = 440
Score = 99.8 bits (247), Expect = 2e-21
Identities = 44/88 (50%), Positives = 64/88 (72%)
Frame = +2
Query: 2 GGFGYPALVVVNVRKMKYATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDP 181
GGFGYPA+ +N RK KYA L G F + GI +F+RD+S G+G T+++ G+G P I +
Sbjct: 355 GGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEK 414
Query: 182 WDGKDGEMPKEEEIDLSELGIEEPKSEL 265
WDGKDG +P E++IDLS++ ++ K+EL
Sbjct: 415 WDGKDGALPAEDDIDLSDIDLD--KTEL 440
>sp|O54943|PER2_MOUSE Period circadian protein 2 (mPER2)
Length = 1257
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 267 KKYHLGSLDPLVHAGGLPTGDDVYSCYCC 353
++ L + P VH GGLPT DV C C
Sbjct: 1185 QRRELREVHPWVHTGGLPTAIDVTGCVYC 1213
>sp|Q9Z301|PER2_RAT Period circadian protein 2 (rPER2)
Length = 1257
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 267 KKYHLGSLDPLVHAGGLPTGDDVYSCYCC 353
++ L + P VH GGLPT DV C C
Sbjct: 1185 QRRELREVHPWVHTGGLPTAIDVTGCVYC 1213
>sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 beta subunit
(eIF-2-beta)
Length = 271
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 146 GEGLPAITPVDPWDGKDGEMPKEEEID 226
GEG+ TP PW+G D + EE +D
Sbjct: 98 GEGIVLETPSYPWEGSDRDYTYEELLD 124
>sp|O15354|GPR37_HUMAN Probable G-protein coupled receptor 37 precursor (Endothelin B
receptor-like protein 1) (ETBR-LP-1) (Parkin-associated
endothelin receptor-like receptor) (PAELR)
Length = 613
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 104 RDVSLGRGSTAAIVGEGLPAITPVDP--WDGKDGEMPKE 214
RD + GRG+ A+ G P P P W G G+ P E
Sbjct: 94 RDPAAGRGAEASAAGPPGPPTRPPGPWRWKGARGQEPSE 132
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,751,209
Number of Sequences: 369166
Number of extensions: 839546
Number of successful extensions: 2880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2875
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)