Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_G04
(806 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8V439|R1AB_CVBLU Replicase polyprotein 1ab (pp1ab) (ORF... 33 0.92
sp|Q91A29|R1AB_CVBEN Replicase polyprotein 1ab (pp1ab) (ORF... 33 1.2
sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1... 33 1.2
sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1... 33 1.2
sp|Q8BFV3|DUS4_MOUSE Dual specificity protein phosphatase 4 31 3.5
sp|Q13115|DUS4_HUMAN Dual specificity protein phosphatase 4... 31 3.5
sp|Q62767|DUS4_RAT Dual specificity protein phosphatase 4 (... 31 3.5
sp|Q94VC3|NU1M_VARRU NADH-ubiquinone oxidoreductase chain 1... 31 4.6
>sp|Q8V439|R1AB_CVBLU Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7094
Score = 33.1 bits (74), Expect = 0.92
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Frame = +1
Query: 151 NFQTNYKSILSSYYVDCVKIIDEIKDCNEKVDYLVNFLQLL---SIYYTQTL----YRDI 309
N + +KS+L++YY+D VK K++Y + Q YYTQ + ++
Sbjct: 1864 NLKQTFKSVLTTYYLDDVK----------KIEYKPDLSQYYCDGGKYYTQRIIKAQFKTF 1913
Query: 310 LAVSXXXXXXKKI-FLICDNRNAAIIYESLK--ITYKLTD 420
V K I ICD NA + ++S K + YK+T+
Sbjct: 1914 EKVDGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTE 1953
>sp|Q91A29|R1AB_CVBEN Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7094
Score = 32.7 bits (73), Expect = 1.2
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Frame = +1
Query: 151 NFQTNYKSILSSYYVDCVKIIDEIKDCNEKVDYLVNFLQLLSIYYTQTL----YRDILAV 318
N + +KS+L++YY+D VK I+ D ++ Y + YYTQ + ++ V
Sbjct: 1864 NLKQTFKSVLTTYYLDDVKKIEYNPDLSQ---YYCDG----GKYYTQRIIKAQFKTFEKV 1916
Query: 319 SXXXXXXKKI-FLICDNRNAAIIYESLK--ITYKLTD 420
K I ICD NA + ++S K + YK+T+
Sbjct: 1917 DGVYTNFKLIGHTICDILNAKLGFDSSKEFVEYKVTE 1953
>sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7094
Score = 32.7 bits (73), Expect = 1.2
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Frame = +1
Query: 151 NFQTNYKSILSSYYVDCVKIIDEIKDCNEKVDYLVNFLQLL---SIYYTQTL----YRDI 309
N + +KS+L++YY+D VK K++Y + Q YYTQ + ++
Sbjct: 1864 NLKQTFKSVLTTYYLDDVK----------KIEYKPDLSQYYCDGGKYYTQRIIKAQFKTF 1913
Query: 310 LAVSXXXXXXKKI-FLICDNRNAAIIYESLK--ITYKLTD 420
V K I +CD NA + ++S K + YK+T+
Sbjct: 1914 EKVDGVYTNFKLIGHTVCDILNAKLGFDSSKEFVEYKVTE 1953
>sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7059
Score = 32.7 bits (73), Expect = 1.2
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Frame = +1
Query: 151 NFQTNYKSILSSYYVDCVKIIDEIKDCNEKVDYLVNFLQLL---SIYYTQTL----YRDI 309
N + +KS+L++YY+D VK K++Y + Q YYTQ + ++
Sbjct: 1864 NLKQTFKSVLTTYYLDDVK----------KIEYKPDLSQYYCDGGKYYTQRIIKAQFKTF 1913
Query: 310 LAVSXXXXXXKKI-FLICDNRNAAIIYESLK--ITYKLTD 420
V K I +CD NA + ++S K + YK+T+
Sbjct: 1914 EKVDGVYTNFKLIGHTVCDILNAKLGFDSSKEFVEYKVTE 1953
>sp|Q8BFV3|DUS4_MOUSE Dual specificity protein phosphatase 4
Length = 398
Score = 31.2 bits (69), Expect = 3.5
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +1
Query: 157 QTNYKSILSSYYVDCVKIIDEIKDCNEKV 243
+ N+K+ +SS++++ ++ ID +KDC +V
Sbjct: 252 EDNHKADISSWFMEAIEYIDAVKDCRGRV 280
>sp|Q13115|DUS4_HUMAN Dual specificity protein phosphatase 4 (Mitogen-activated protein
kinase phosphatase 2) (MAP kinase phosphatase 2) (MKP-2)
(Dual specificity protein phosphatase hVH2)
Length = 394
Score = 31.2 bits (69), Expect = 3.5
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +1
Query: 157 QTNYKSILSSYYVDCVKIIDEIKDCNEKV 243
+ N+K+ +SS++++ ++ ID +KDC +V
Sbjct: 248 EDNHKADISSWFMEAIEYIDAVKDCRGRV 276
>sp|Q62767|DUS4_RAT Dual specificity protein phosphatase 4 (Mitogen-activated protein
kinase phosphatase 2) (MAP kinase phosphatase 2) (MKP-2)
Length = 395
Score = 31.2 bits (69), Expect = 3.5
Identities = 10/29 (34%), Positives = 22/29 (75%)
Frame = +1
Query: 157 QTNYKSILSSYYVDCVKIIDEIKDCNEKV 243
+ N+K+ +SS++++ ++ ID +KDC +V
Sbjct: 249 EDNHKADISSWFMEAIEYIDAVKDCRGRV 277
>sp|Q94VC3|NU1M_VARRU NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 318
Score = 30.8 bits (68), Expect = 4.6
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -1
Query: 680 PIRNQQSSTQLFSIRNVLCLPKARALSSMIPIAISKHSLENVPKNLLTIFSRMIL*RNST 501
PIR +S L + +L L A + + IP+ H+L N+ LL+I + + NST
Sbjct: 61 PIRPLNTSPTLLILSPILALTTAMLIWTPIPMP---HALTNLNLGLLSILAISSMAVNST 117
Query: 500 MLAGHTQSS 474
+ AG +S
Sbjct: 118 LWAGWASNS 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,695,158
Number of Sequences: 369166
Number of extensions: 1503239
Number of successful extensions: 3627
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3627
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)