Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F17
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35186|CATK_RAT Cathepsin K precursor 150 3e-36
sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein) 147 4e-35
sp|P55097|CATK_MOUSE Cathepsin K precursor 146 6e-35
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 145 1e-34
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 144 2e-34
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 141 2e-33
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 137 5e-32
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 132 9e-31
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 132 1e-30
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 132 1e-30
>sp|O35186|CATK_RAT Cathepsin K precursor
Length = 329
Score = 150 bits (380), Expect = 3e-36
Identities = 78/158 (49%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Frame = +2
Query: 14 FVVAHVAPHKLTVNSELNDDWESYKIKFGKKYES-LNEISRRLIWESNLKYIQKHNIESD 190
F++ V L+ L+ WE +K GK+Y S ++EISRRLIWE NLK I HN+E+
Sbjct: 6 FLLLPVVSFALSPEETLDTQWELWKKTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEAS 65
Query: 191 LGKHTYTLGLNHFAVMTNEEFRAKY--LSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEG 364
LG HTY L +NH MT+EE K L VPPSR + P+ G++PD++ +R +G
Sbjct: 66 LGAHTYELAMNHLGDMTSEEVVQKMTGLRVPPSRSFSNDTLYTPEWEGRVPDSIDYRKKG 125
Query: 365 YVTPVKNQEQCGSCWSFSATGSLEGQHFSKTGNLTSFS 478
YVTPVKNQ QCGSCW+FS+ G+LEGQ KTG L + S
Sbjct: 126 YVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALS 163
Score = 50.8 bits (120), Expect = 4e-06
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 MDNAFEYIEKFG-IESEDAYPYTAEDGTCLYDKSKVVGSCTGYVDIP 677
M AF+Y+++ G I+SEDAYPY +D +C+Y+ + C GY +IP
Sbjct: 182 MTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIP 228
Score = 37.0 bits (84), Expect = 0.064
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDC 802
GP+SV+IDAS SFQ Y G+Y + +C
Sbjct: 243 GPVSVSIDASLTSFQFYSRGVYYDENC 269
>sp|P43236|CATK_RABIT Cathepsin K precursor (OC-2 protein)
Length = 329
Score = 147 bits (370), Expect = 4e-35
Identities = 74/142 (52%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Frame = +2
Query: 62 LNDDWESYKIKFGKKYES-LNEISRRLIWESNLKYIQKHNIESDLGKHTYTLGLNHFAVM 238
L+ WE +K + K+Y S ++EISRRLIWE NLK+I HN+E+ LG HTY L +NH M
Sbjct: 22 LDTQWELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 81
Query: 239 TNEEFRAKY--LSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEGYVTPVKNQEQCGSCWS 412
T+EE K L VPPSR + P G+ PD++ +R +GYVTPVKNQ QCGSCW+
Sbjct: 82 TSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 141
Query: 413 FSATGSLEGQHFSKTGNLTSFS 478
FS+ G+LEGQ KTG L + S
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLS 163
Score = 53.1 bits (126), Expect = 9e-07
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 MDNAFEYIEKF-GIESEDAYPYTAEDGTCLYDKSKVVGSCTGYVDIP 677
M NAF+Y+++ GI+SEDAYPY +D +C+Y+ + C GY +IP
Sbjct: 182 MTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIP 228
Score = 41.6 bits (96), Expect = 0.003
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GP+SVAIDAS SFQ Y G+Y + +CSS
Sbjct: 243 GPVSVAIDASLTSFQFYSKGVYYDENCSS 271
>sp|P55097|CATK_MOUSE Cathepsin K precursor
Length = 329
Score = 146 bits (369), Expect = 6e-35
Identities = 75/158 (47%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Frame = +2
Query: 14 FVVAHVAPHKLTVNSELNDDWESYKIKFGKKYES-LNEISRRLIWESNLKYIQKHNIESD 190
F++ + L+ L+ WE +K K+Y S ++EISRRLIWE NLK I HN+E+
Sbjct: 6 FLLLPMVSFALSPEEMLDTQWELWKKTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEAS 65
Query: 191 LGKHTYTLGLNHFAVMTNEEFRAKY--LSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEG 364
LG HTY L +NH MT+EE K L +PPSR + P+ G++PD++ +R +G
Sbjct: 66 LGVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKG 125
Query: 365 YVTPVKNQEQCGSCWSFSATGSLEGQHFSKTGNLTSFS 478
YVTPVKNQ QCGSCW+FS+ G+LEGQ KTG L + S
Sbjct: 126 YVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALS 163
Score = 50.8 bits (120), Expect = 4e-06
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 MDNAFEYIEKFG-IESEDAYPYTAEDGTCLYDKSKVVGSCTGYVDIP 677
M AF+Y+++ G I+SEDAYPY +D +C+Y+ + C GY +IP
Sbjct: 182 MTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIP 228
Score = 37.4 bits (85), Expect = 0.049
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDC 802
GPISV+IDAS SFQ Y G+Y + +C
Sbjct: 243 GPISVSIDASLASFQFYSRGVYYDENC 269
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 145 bits (366), Expect = 1e-34
Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Frame = +2
Query: 62 LNDDWESYKIKFGKKYES-LNEISRRLIWESNLKYIQKHNIESDLGKHTYTLGLNHFAVM 238
L+ WE +K + K+Y S ++EISRRLIWE NLK+I HN+E+ LG HTY L +NH M
Sbjct: 23 LDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 82
Query: 239 TNEEFRAKY--LSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEGYVTPVKNQEQCGSCWS 412
T+EE K L VPPS + + P G+ PD++ +R +GYVTPVKNQ QCGSCW+
Sbjct: 83 TSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 142
Query: 413 FSATGSLEGQHFSKTGNLTSFS 478
FS+ G+LEGQ KTG L + S
Sbjct: 143 FSSVGALEGQLKKKTGKLLNLS 164
Score = 53.9 bits (128), Expect = 5e-07
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 MDNAFEYIEKF-GIESEDAYPYTAEDGTCLYDKSKVVGSCTGYVDIP 677
M NAF+Y++K GI+SEDAYPY +D C+Y+ + C GY +IP
Sbjct: 183 MTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIP 229
Score = 40.4 bits (93), Expect = 0.006
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GP+SVAIDAS SFQ Y G+Y + +C+S
Sbjct: 244 GPVSVAIDASLTSFQFYSKGVYYDENCNS 272
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 144 bits (364), Expect = 2e-34
Identities = 75/142 (52%), Positives = 93/142 (65%), Gaps = 3/142 (2%)
Frame = +2
Query: 62 LNDDWESYKIKFGKKYES-LNEISRRLIWESNLKYIQKHNIESDLGKHTYTLGLNHFAVM 238
L+ WE +K K+Y S ++EISRRLIWE NLKYI HN+E+ LG HTY L +NH M
Sbjct: 22 LDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 239 TNEEFRAKY--LSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEGYVTPVKNQEQCGSCWS 412
TNEE K L VP S + + P G+ PD+V +R +GYVTPVKNQ QCGSCW+
Sbjct: 82 TNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 413 FSATGSLEGQHFSKTGNLTSFS 478
FS+ G+LEGQ KTG L + S
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLS 163
Score = 52.8 bits (125), Expect = 1e-06
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 MDNAFEYIEKF-GIESEDAYPYTAEDGTCLYDKSKVVGSCTGYVDIP 677
M NAF+Y++K GI+SEDAYPY ++ +C+Y+ + C GY +IP
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIP 228
Score = 40.0 bits (92), Expect = 0.008
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GP+SVAIDAS SFQ Y G+Y + C+S
Sbjct: 243 GPVSVAIDASLTSFQFYSKGVYYDESCNS 271
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 141 bits (356), Expect = 2e-33
Identities = 73/142 (51%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Frame = +2
Query: 62 LNDDWESYKIKFGKKYES-LNEISRRLIWESNLKYIQKHNIESDLGKHTYTLGLNHFAVM 238
L+ WE +K K+Y + ++EISRRLIWE NLKYI HN+E+ LG HTY L +NH M
Sbjct: 22 LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 239 TNEEFRAKY--LSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEGYVTPVKNQEQCGSCWS 412
T+EE K L VP S + + P+ G+ PD+V +R +GYVTPVKNQ QCGSCW+
Sbjct: 82 TSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 413 FSATGSLEGQHFSKTGNLTSFS 478
FS+ G+LEGQ KTG L + S
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLS 163
Score = 52.8 bits (125), Expect = 1e-06
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 MDNAFEYIEKF-GIESEDAYPYTAEDGTCLYDKSKVVGSCTGYVDIP 677
M NAF+Y++K GI+SEDAYPY ++ +C+Y+ + C GY +IP
Sbjct: 182 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIP 228
Score = 40.0 bits (92), Expect = 0.008
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GP+SVAIDAS SFQ Y G+Y + C+S
Sbjct: 243 GPVSVAIDASLTSFQFYSKGVYYDESCNS 271
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 137 bits (344), Expect = 5e-32
Identities = 73/159 (45%), Positives = 91/159 (57%)
Frame = +2
Query: 5 ALVFVVAHVAPHKLTVNSELNDDWESYKIKFGKKYESLNEISRRLIWESNLKYIQKHNIE 184
AL +A AP + LN W +K + Y E RR +WE N+K I+ HN E
Sbjct: 9 ALCLGIASAAPK---FDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNRE 65
Query: 185 SDLGKHTYTLGLNHFAVMTNEEFRAKYLSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEG 364
GKH +T+ +N F MTNEEFR + K +F P ++P +V WR +G
Sbjct: 66 YSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPL-FAEIPKSVDWREKG 124
Query: 365 YVTPVKNQEQCGSCWSFSATGSLEGQHFSKTGNLTSFSE 481
YVTPVKNQ QCGSCW+FSATG+LEGQ F KTG L S SE
Sbjct: 125 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSE 163
Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GPISVAIDA + SFQ YKSGIY +PDCSS
Sbjct: 244 GPISVAIDAGHQSFQFYKSGIYFDPDCSS 272
Score = 49.3 bits (116), Expect = 1e-05
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 468 LAFQRQQLVDXXXXXXXXXXXXXLMDNAFEYI-EKFGIESEDAYPYTAED-GTCLYDKSK 641
++ Q LVD LMDNAF Y+ + G++SE++YPY D TC Y
Sbjct: 159 VSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPEC 218
Query: 642 VVGSCTGYVDIPGRK 686
+ TG+VD+P R+
Sbjct: 219 SAANDTGFVDLPQRE 233
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 132 bits (333), Expect = 9e-31
Identities = 71/159 (44%), Positives = 93/159 (58%)
Frame = +2
Query: 5 ALVFVVAHVAPHKLTVNSELNDDWESYKIKFGKKYESLNEISRRLIWESNLKYIQKHNIE 184
AL +A AP ++ L+ DW +K G+ Y E RR +WE N+K I+ HN E
Sbjct: 9 ALCLGIASAAPK---LDQNLDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIELHNQE 65
Query: 185 SDLGKHTYTLGLNHFAVMTNEEFRAKYLSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEG 364
GKH +++ +N F MTNEEFR + K +F + ++P +V WR +G
Sbjct: 66 YSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVL-EVPKSVDWREKG 124
Query: 365 YVTPVKNQEQCGSCWSFSATGSLEGQHFSKTGNLTSFSE 481
YVT VKNQ QCGSCW+FSATG+LEGQ F KTG L S SE
Sbjct: 125 YVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSE 163
Score = 50.8 bits (120), Expect = 4e-06
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GPISVAIDA + SFQ YKSGIY +PDCSS
Sbjct: 244 GPISVAIDAGHSSFQFYKSGIYYDPDCSS 272
Score = 48.9 bits (115), Expect = 2e-05
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 468 LAFQRQQLVDXXXXXXXXXXXXXLMDNAFEYI-EKFGIESEDAYPYTA-EDGTCLYDKSK 641
++ Q LVD LMDNAF+Y+ + G+++E++YPY E +C Y
Sbjct: 159 VSLSEQNLVDCSRPQGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPEC 218
Query: 642 VVGSCTGYVDIPGRK 686
+ TG+VDIP R+
Sbjct: 219 SAANDTGFVDIPQRE 233
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 132 bits (331), Expect = 1e-30
Identities = 68/151 (45%), Positives = 88/151 (58%)
Frame = +2
Query: 29 VAPHKLTVNSELNDDWESYKIKFGKKYESLNEISRRLIWESNLKYIQKHNIESDLGKHTY 208
+A LT + L W +K + Y E RR +WE N+K I+ HN E GKH++
Sbjct: 14 IASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSF 73
Query: 209 TLGLNHFAVMTNEEFRAKYLSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEGYVTPVKNQ 388
T+ +N F MT+EEFR + + +F P + P +V WR +GYVTPVKNQ
Sbjct: 74 TMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPL-FYEAPRSVDWREKGYVTPVKNQ 132
Query: 389 EQCGSCWSFSATGSLEGQHFSKTGNLTSFSE 481
QCGSCW+FSATG+LEGQ F KTG L S SE
Sbjct: 133 GQCGSCWAFSATGALEGQMFRKTGRLISLSE 163
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 468 LAFQRQQLVDXXXXXXXXXXXXXLMDNAFEYIE-KFGIESEDAYPYTAEDGTCLYDKSKV 644
++ Q LVD LMD AF+Y++ G++SE++YPY A + +C Y+
Sbjct: 159 ISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS 218
Query: 645 VGSCTGYVDIP 677
V + TG+VDIP
Sbjct: 219 VANDTGFVDIP 229
Score = 47.4 bits (111), Expect = 5e-05
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GPISVAIDA + SF YK GIY EPDCSS
Sbjct: 243 GPISVAIDAGHESFLFYKEGIYFEPDCSS 271
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 132 bits (331), Expect = 1e-30
Identities = 67/143 (46%), Positives = 87/143 (60%)
Frame = +2
Query: 53 NSELNDDWESYKIKFGKKYESLNEISRRLIWESNLKYIQKHNIESDLGKHTYTLGLNHFA 232
+ L+ W +K + Y + E RR +WE N+K I+ HN E GKH +T+ +N F
Sbjct: 22 DQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFG 81
Query: 233 VMTNEEFRAKYLSVPPSRKKISTIFMAPKNMGKLPDTVVWRTEGYVTPVKNQEQCGSCWS 412
MTNEEFR + + +F P + LP +V WR +GYVTPVKNQ+QCGSCW+
Sbjct: 82 DMTNEEFRQMMGCFRNQKFRKGKVFREPLFLD-LPKSVDWRKKGYVTPVKNQKQCGSCWA 140
Query: 413 FSATGSLEGQHFSKTGNLTSFSE 481
FSATG+LEGQ F KTG L S SE
Sbjct: 141 FSATGALEGQMFRKTGKLVSLSE 163
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/29 (79%), Positives = 25/29 (86%)
Frame = +2
Query: 722 GPISVAIDASNYSFQLYKSGIYNEPDCSS 808
GPISVA+DA + SFQ YKSGIY EPDCSS
Sbjct: 244 GPISVAMDAGHSSFQFYKSGIYFEPDCSS 272
Score = 43.1 bits (100), Expect = 9e-04
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 468 LAFQRQQLVDXXXXXXXXXXXXXLMDNAFEYI-EKFGIESEDAYPYTAEDGTCLYDKSKV 644
++ Q LVD M AF+Y+ E G++SE++YPY A D C Y
Sbjct: 159 VSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS 218
Query: 645 VGSCTGY-VDIPGRK 686
V + TG+ V PG++
Sbjct: 219 VANDTGFTVVAPGKE 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,311,997
Number of Sequences: 369166
Number of extensions: 1819349
Number of successful extensions: 5575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5436
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)