Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F13
(332 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3C8|UFC1_HUMAN Ufm1-conjugating enzyme 1 (Ubiquitin-f... 80 1e-15
sp|Q5E953|UFC1_BOVIN Ufm1-conjugating enzyme 1 (Ubiquitin-f... 80 1e-15
sp|Q6BBI8|UFC1_RAT Ufm1-conjugating enzyme 1 (Ubiquitin-fol... 80 2e-15
sp|Q9CR09|UFC1_MOUSE Ufm1-conjugating enzyme 1 (Ubiquitin-f... 80 2e-15
sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiq... 77 1e-14
sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2... 29 3.0
sp|P42858|HD_HUMAN Huntingtin (Huntington's disease protein... 28 6.6
sp|P16397|SUBF_BACSU Bacillopeptidase F precursor (Esterase... 28 6.6
sp|Q61824|ADA12_MOUSE ADAM 12 precursor (A disintegrin and ... 28 8.7
sp|P08468|PT11_YEAST PET111 protein, mitochondrial precursor 28 8.7
>sp|Q9Y3C8|UFC1_HUMAN Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 80.1 bits (196), Expect = 1e-15
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = +2
Query: 2 HFKPLWSRNVPKFGIGHAMALGLGPWLAVEIPDMSSKGIIKDKD 133
HFKPLW+RNVPKFG+ H MALGLGPWLAVEIPD+ KG+I+ K+
Sbjct: 120 HFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>sp|Q5E953|UFC1_BOVIN Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 80.1 bits (196), Expect = 1e-15
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = +2
Query: 2 HFKPLWSRNVPKFGIGHAMALGLGPWLAVEIPDMSSKGIIKDKD 133
HFKPLW+RNVPKFG+ H MALGLGPWLAVEIPD+ KG+I+ K+
Sbjct: 120 HFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>sp|Q6BBI8|UFC1_RAT Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 79.7 bits (195), Expect = 2e-15
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = +2
Query: 2 HFKPLWSRNVPKFGIGHAMALGLGPWLAVEIPDMSSKGIIKDKD 133
HFKPLW+RNVPKFG+ H MALGLGPWLAVE+PD+ KG+I+ K+
Sbjct: 120 HFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKE 163
>sp|Q9CR09|UFC1_MOUSE Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 79.7 bits (195), Expect = 2e-15
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = +2
Query: 2 HFKPLWSRNVPKFGIGHAMALGLGPWLAVEIPDMSSKGIIKDKD 133
HFKPLW+RNVPKFG+ H MALGLGPWLAVE+PD+ KG+I+ K+
Sbjct: 120 HFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKE 163
>sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiquitin-fold
modifier-conjugating enzyme)
Length = 162
Score = 77.4 bits (189), Expect = 1e-14
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 2 HFKPLWSRNVPKFGIGHAMALGLGPWLAVEIPDMSSKGIIKDK 130
HFKPLW+RN PKFGI HA ALGLGPW+AVEIPD+ KG+I+ K
Sbjct: 119 HFKPLWARNTPKFGIAHAFALGLGPWMAVEIPDLIEKGLIQPK 161
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 567
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 268 WIMTQINNVNSISLTPLY*KAVFK*IISSFVKINIINQNENKLFRIFIFNNAFRTHIWNF 89
W + N + + LY +FK I S++ N N N+ I+IFN+ ++ +I+N
Sbjct: 33 WKLQNYNIIRIGIIIILYSLYIFKDISLSYIFNNYNNNND---LNIYIFNDLYKLNIFNI 89
Query: 88 H 86
+
Sbjct: 90 Y 90
>sp|P42858|HD_HUMAN Huntingtin (Huntington's disease protein) (HD protein)
Length = 3144
Score = 28.1 bits (61), Expect = 6.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 316 VFKTLNKTRHHEFIKDWIMTQINN 245
VF+TL+ T ++DW+M ++N
Sbjct: 3021 VFQTLHSTGQSSMVRDWVMLSLSN 3044
>sp|P16397|SUBF_BACSU Bacillopeptidase F precursor (Esterase) (RP-I protease) (90 kDa
serine proteinase)
Length = 1433
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = +2
Query: 50 HAMALGLGPWLAVEIPDMSSKGIIKDKDSE*FVFILVY 163
+A AL G W V D+SSKGI+ DKD F LVY
Sbjct: 1073 NAEALRNGEWTKV---DLSSKGIMVDKD-----FYLVY 1102
>sp|Q61824|ADA12_MOUSE ADAM 12 precursor (A disintegrin and metalloproteinase domain 12)
(Meltrin alpha)
Length = 903
Score = 27.7 bits (60), Expect = 8.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 168 IL*TKMKTNYSESLSLIMPLELISG--ISTANHGPKPSAMACPIPNFGTFRDQRGLKC 1
+L T KT E L + P SG + A+H P + P+F T +D+ LKC
Sbjct: 735 LLFTHKKTTM-EKLRCVHPSRTPSGPHLGQAHHTPGKGLLMNRAPHFNTPKDRHSLKC 791
>sp|P08468|PT11_YEAST PET111 protein, mitochondrial precursor
Length = 800
Score = 27.7 bits (60), Expect = 8.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 322 KYVFKTLNKTRHHEFIKDWIMTQINNVNSIS 230
+Y L K +H E I+DW+ Q+ + ++IS
Sbjct: 32 RYYSTELIKKKHKEDIEDWVKAQLKDSSTIS 62
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,885,848
Number of Sequences: 369166
Number of extensions: 626404
Number of successful extensions: 1438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)