Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F11
(581 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BUN8|DERL1_HUMAN Derlin-1 (Degradation in endoplasmic ... 235 7e-62
sp|Q71SS4|DERL1_BOVIN Derlin-1 (Degradation in endoplasmic ... 235 7e-62
sp|Q5R9W3|DERL1_PONPY Derlin-1 (Degradation in endoplasmic ... 234 9e-62
sp|Q99J56|DERL1_MOUSE Derlin-1 (Degradation in endoplasmic ... 233 3e-61
sp|Q93561|DERL1_CAEEL Derlin-1 (DER1-like protein 1) (cDerl... 179 6e-45
sp|Q9VQ57|DERL1_DROME Derlin-1 (DER1-like protein 1) 166 3e-41
sp|Q9D8K3|DERL3_MOUSE Derlin-3 (Degradation in endoplasmic ... 108 1e-23
sp|Q5RC74|DERL2_PONPY Derlin-2 (Degradation in endoplasmic ... 107 3e-23
sp|Q8BNI4|DERL2_MOUSE Derlin-2 (Degradation in endoplasmic ... 106 4e-23
sp|Q96Q80|DERL3_HUMAN Derlin-3 (Degradation in endoplasmic ... 106 4e-23
>sp|Q9BUN8|DERL1_HUMAN Derlin-1 (Degradation in endoplasmic reticulum protein 1)
(Der1-like protein 1) (DERtrin-1)
Length = 251
Score = 235 bits (599), Expect = 7e-62
Identities = 106/176 (60%), Positives = 133/176 (75%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
+LYFLY YSTRLETG F G+PADYLFML+FNW+C+V+ G + LLM P+I+SVLYVW
Sbjct: 75 NLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWA 134
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
QLN+D+IV FWFGT+FKA YLPW++LGFN II G ++L+G +VGHLYFFLMF+YP +
Sbjct: 135 QLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDL 194
Query: 364 GGNVWLRTPQFLYKWLPNTVGGVSGFGMAPSSRIARGDTSSNSRPRFPGRGQTLGD 531
GG +L TPQFLY+WLP+ GGVSGFG+ P+S D + G+G LGD
Sbjct: 195 GGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250
>sp|Q71SS4|DERL1_BOVIN Derlin-1 (Degradation in endoplasmic reticulum protein 1)
(Der1-like protein 1)
Length = 251
Score = 235 bits (599), Expect = 7e-62
Identities = 106/176 (60%), Positives = 133/176 (75%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
+LYFLY YSTRLETG F G+PADYLFML+FNW+C+V+ G + LLM P+I+SVLYVW
Sbjct: 75 NLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWA 134
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
QLN+D+IV FWFGT+FKA YLPW++LGFN II G ++L+G +VGHLYFFLMF+YP +
Sbjct: 135 QLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDL 194
Query: 364 GGNVWLRTPQFLYKWLPNTVGGVSGFGMAPSSRIARGDTSSNSRPRFPGRGQTLGD 531
GG +L TPQFLY+WLP+ GGVSGFG+ P+S D + G+G LGD
Sbjct: 195 GGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250
>sp|Q5R9W3|DERL1_PONPY Derlin-1 (Degradation in endoplasmic reticulum protein 1)
(Der1-like protein 1)
Length = 251
Score = 234 bits (598), Expect = 9e-62
Identities = 106/176 (60%), Positives = 133/176 (75%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
+LYFLY YSTRLETG F G+PADYLFML+FNW+C+V+ G + LLM P+I+SVLYVW
Sbjct: 75 NLYFLYHYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWA 134
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
QLN+D+IV FWFGT+FKA YLPW++LGFN II G ++L+G +VGHLYFFLMF+YP +
Sbjct: 135 QLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDL 194
Query: 364 GGNVWLRTPQFLYKWLPNTVGGVSGFGMAPSSRIARGDTSSNSRPRFPGRGQTLGD 531
GG +L TPQFLY+WLP+ GGVSGFG+ P+S D + G+G LGD
Sbjct: 195 GGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250
>sp|Q99J56|DERL1_MOUSE Derlin-1 (Degradation in endoplasmic reticulum protein 1)
(Der1-like protein 1)
Length = 251
Score = 233 bits (594), Expect = 3e-61
Identities = 105/176 (59%), Positives = 132/176 (75%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
+LYFLY YSTRLE G F G+PADYLFML+FNW+C+V+ G + LLM P+I+SVLYVW
Sbjct: 75 NLYFLYQYSTRLEAGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWA 134
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
QLN+D+IV FWFGT+FKA YLPW++LGFN II G ++L+G +VGHLYFFLMF+YP +
Sbjct: 135 QLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDL 194
Query: 364 GGNVWLRTPQFLYKWLPNTVGGVSGFGMAPSSRIARGDTSSNSRPRFPGRGQTLGD 531
GG +L TPQFLY+WLP+ GGVSGFG+ P+S D + G+G LGD
Sbjct: 195 GGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250
>sp|Q93561|DERL1_CAEEL Derlin-1 (DER1-like protein 1) (cDerlin-1)
Length = 245
Score = 179 bits (453), Expect = 6e-45
Identities = 78/143 (54%), Positives = 107/143 (74%)
Frame = +1
Query: 10 YFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWCQL 189
YFLY+YS LE+ T+ G+ ADYLFMLIFNW + +Y L++PM+ISVLYVWCQ+
Sbjct: 76 YFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLLEPMVISVLYVWCQV 135
Query: 190 NKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEFGG 369
NKD IV FWFG +F A YLPW+L GFN ++ GGG ++L+GI+VGH YFF+ KYP E+G
Sbjct: 136 NKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGV 195
Query: 370 NVWLRTPQFLYKWLPNTVGGVSG 438
++ + TP+FL++ +P+ GG+ G
Sbjct: 196 DL-ISTPEFLHRLIPDEDGGIHG 217
>sp|Q9VQ57|DERL1_DROME Derlin-1 (DER1-like protein 1)
Length = 245
Score = 166 bits (421), Expect = 3e-41
Identities = 79/173 (45%), Positives = 110/173 (63%)
Frame = +1
Query: 10 YFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWCQL 189
+F+ YS++LE +S PADYL++LI + + + G I +Y LMD +++++ Y+WCQL
Sbjct: 76 FFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQL 135
Query: 190 NKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEFGG 369
NKDV V FWFGT+FKAMYLPW+L F I + L+GI VGH+Y+F F+Y Q+ GG
Sbjct: 136 NKDVTVSFWFGTRFKAMYLPWVLAAFEFIFH-FSLASLVGIFVGHVYYFFKFQYSQDLGG 194
Query: 370 NVWLRTPQFLYKWLPNTVGGVSGFGMAPSSRIARGDTSSNSRPRFPGRGQTLG 528
L TPQFL + +P+ GG GFG+ P SR + + GRG TLG
Sbjct: 195 TPLLETPQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPW----GRGMTLG 243
>sp|Q9D8K3|DERL3_MOUSE Derlin-3 (Degradation in endoplasmic reticulum protein 3)
(Der1-like protein 3) (Protein IZP6)
Length = 228
Score = 108 bits (269), Expect = 1e-23
Identities = 48/132 (36%), Positives = 83/132 (62%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
++ F++ Y LE G+F G+ AD++FM +F + + ++GF+ L+ L ++ ++YVW
Sbjct: 74 NMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSLFFLGQALMAMLVYVWS 133
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
+ + V V F+ F+A +LPW L+GF++++ +DLLGI+VGH+Y+FL +P +
Sbjct: 134 RRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQP 193
Query: 364 GGNVWLRTPQFL 399
GG L TP L
Sbjct: 194 GGKRLLLTPSVL 205
>sp|Q5RC74|DERL2_PONPY Derlin-2 (Degradation in endoplasmic reticulum protein 2)
(Der1-like protein 2)
sp|Q9GZP9|DERL2_HUMAN Derlin-2 (Degradation in endoplasmic reticulum protein 2)
(Der1-like protein 2) (DERtrin-2) (F-LANa) (F-LAN-1)
Length = 239
Score = 107 bits (266), Expect = 3e-23
Identities = 51/132 (38%), Positives = 77/132 (58%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
++ FLY Y LE G+F G+ AD++FM +F + + G L L I ++YVW
Sbjct: 74 NMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVYVWS 133
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
+ N V + F+ F+A +LPW+L+GF++++ DLLGI VGH+YFFL +P +
Sbjct: 134 RRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQP 193
Query: 364 GGNVWLRTPQFL 399
GG L+TP L
Sbjct: 194 GGIRILKTPSIL 205
>sp|Q8BNI4|DERL2_MOUSE Derlin-2 (Degradation in endoplasmic reticulum protein 2)
(Der1-like protein 2) (F-LANa)
Length = 239
Score = 106 bits (265), Expect = 4e-23
Identities = 51/132 (38%), Positives = 77/132 (58%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
++ FLY Y LE G+F G+ AD++FM +F + + G L L I ++YVW
Sbjct: 74 NMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVYVWS 133
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
+ N V + F+ F+A +LPW+L+GF++++ DLLGI VGH+YFFL +P +
Sbjct: 134 RRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQP 193
Query: 364 GGNVWLRTPQFL 399
GG L+TP L
Sbjct: 194 GGIRILKTPSIL 205
>sp|Q96Q80|DERL3_HUMAN Derlin-3 (Degradation in endoplasmic reticulum protein 3)
(Der1-like protein 3) (DERtrin-3)
Length = 235
Score = 106 bits (265), Expect = 4e-23
Identities = 48/132 (36%), Positives = 82/132 (62%)
Frame = +1
Query: 4 DLYFLYSYSTRLETGTFSGKPADYLFMLIFNWLCLVVIGFIAPLYLLMDPMIISVLYVWC 183
++ F++ Y LE G+F G+ AD++FM +F + + ++G + L+ L ++ ++YVW
Sbjct: 74 NMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMAMLVYVWS 133
Query: 184 QLNKDVIVQFWFGTQFKAMYLPWILLGFNMIISGGGFSDLLGIVVGHLYFFLMFKYPQEF 363
+ + V V F+ F+A +LPW L+GF++++ DLLGI VGH+Y+FL +P +
Sbjct: 134 RRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQP 193
Query: 364 GGNVWLRTPQFL 399
GG L+TP FL
Sbjct: 194 GGKRLLQTPGFL 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,118,470
Number of Sequences: 369166
Number of extensions: 1659803
Number of successful extensions: 3969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3963
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)