Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F08
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex... 126 6e-29
sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex... 126 6e-29
sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex... 126 6e-29
sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex... 126 6e-29
sp|P70670|NACAM_MOUSE Nascent polypeptide-associated comple... 126 6e-29
sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex... 125 8e-29
sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex... 124 2e-28
sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex... 124 2e-28
sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex... 124 3e-28
sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex... 123 4e-28
>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 126 bits (316), Expect = 6e-29
Identities = 70/135 (51%), Positives = 86/135 (63%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 174 TGVEVKDIELVMSQA 188
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 181 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC) (Hom s 2.02)
Length = 215
Score = 126 bits (316), Expect = 6e-29
Identities = 70/135 (51%), Positives = 86/135 (63%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 174 TGVEVKDIELVMSQA 188
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 181 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex alpha subunit (Alpha-NAC)
(Alpha-NAC/1.9.2)
Length = 215
Score = 126 bits (316), Expect = 6e-29
Identities = 70/135 (51%), Positives = 86/135 (63%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 174 TGVEVKDIELVMSQA 188
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 181 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 214
Score = 126 bits (316), Expect = 6e-29
Identities = 70/135 (51%), Positives = 86/135 (63%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 60 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 119
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 120 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 172
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 173 TGVEVKDIELVMSQA 187
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 180 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
form (Alpha-NAC, muscle-specific form)
Length = 2187
Score = 126 bits (316), Expect = 6e-29
Identities = 70/135 (51%), Positives = 86/135 (63%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 2033 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 2092
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 2093 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 2145
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 2146 TGVEVKDIELVMSQA 2160
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 2153 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 2186
>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 125 bits (315), Expect = 8e-29
Identities = 70/135 (51%), Positives = 86/135 (63%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 174 TGVEVKDIELVMSQA 188
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN +ND+VNAIMELT
Sbjct: 181 IELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214
>sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 124 bits (311), Expect = 2e-28
Identities = 69/135 (51%), Positives = 85/135 (62%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ V GV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+L+M +
Sbjct: 174 TGVEVKDIELVMSQA 188
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN +ND+VNAIMELT
Sbjct: 181 IELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214
>sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 213
Score = 124 bits (311), Expect = 2e-28
Identities = 69/135 (51%), Positives = 85/135 (62%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 59 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 118
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 119 IVFGEAKIED-------LSQQAQLAAAEKFKVQGETVSNIQENTQTPTVQEESEEEEVDE 171
Query: 515 TGLCENDIKLIMGSS 559
G+ DI+L+M +
Sbjct: 172 AGVEVKDIELVMSQA 186
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 179 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212
>sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 124 bits (310), Expect = 3e-28
Identities = 69/135 (51%), Positives = 85/135 (62%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
TG+ DI+ +M +
Sbjct: 174 TGVEVKDIEWVMSQA 188
Score = 42.7 bits (99), Expect = 9e-04
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +3
Query: 555 QAQVSRNKAIRALKNADNDMVNAIMELT 638
QA VSR KA+RALKN N++VNAIMELT
Sbjct: 187 QANVSRAKAVRALKNNSNNIVNAIMELT 214
>sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 123 bits (309), Expect = 4e-28
Identities = 69/135 (51%), Positives = 85/135 (62%)
Frame = +2
Query: 155 DDPLSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTY 334
++P+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY
Sbjct: 61 EEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTY 120
Query: 335 VVFGEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDA 514
+VFGEAKIED T+QEES+ EE D
Sbjct: 121 IVFGEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDE 173
Query: 515 TGLCENDIKLIMGSS 559
T + DI+L+M +
Sbjct: 174 TDVEVKDIELVMSQA 188
Score = 45.1 bits (105), Expect = 2e-04
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 537 LNL*WDQAQVSRNKAIRALKNADNDMVNAIMELT 638
+ L QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 181 IELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,630,146
Number of Sequences: 369166
Number of extensions: 849835
Number of successful extensions: 2338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)