Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_F03
(332 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q922R8|PDIA6_MOUSE Protein disulfide-isomerase A6 precur... 80 1e-15
sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 precurso... 79 3e-15
sp|P38660|PDIA6_MESAU Protein disulfide-isomerase A6 precur... 75 5e-14
sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 precur... 74 1e-13
sp|Q5R6T1|PDIA6_PONPY Protein disulfide-isomerase A6 precursor 74 1e-13
sp|Q11067|PDIA6_CAEEL Probable protein disulfide-isomerase ... 72 4e-13
sp|O54943|PER2_MOUSE Period circadian protein 2 (mPER2) 31 1.0
sp|Q9Z301|PER2_RAT Period circadian protein 2 (rPER2) 31 1.0
sp|P61826|COAT_PAVC Coat protein VP2 29 3.0
sp|Q11213|COAT_PAVCB Coat protein VP1 [Contains: Coat prote... 29 3.9
>sp|Q922R8|PDIA6_MOUSE Protein disulfide-isomerase A6 precursor (Thioredoxin
domain-containing protein 7)
Length = 440
Score = 80.1 bits (196), Expect = 1e-15
Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 YATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDPWVGKDGEMPKEEEIDLS 182
+A L G FS+ GI +F+R++S GRGSTA + G P ITP +PW GKDGE+P E++IDLS
Sbjct: 369 FALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITprePWDGKDGELPVEDDIDLS 428
Query: 183 ELGIEE-PKSEL 215
++ +++ K EL
Sbjct: 429 DVELDDLEKDEL 440
>sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 precursor (Protein disulfide
isomerase P5) (Calcium-binding protein 1) (CaBP1)
(Thioredoxin domain-containing protein 7)
Length = 440
Score = 79.3 bits (194), Expect = 3e-15
Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 YATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDPWVGKDGEMPKEEEIDLS 182
+A L G FS+ GI +F+R++S GRGSTA + G P ITP +PW GKDGE+P E++IDLS
Sbjct: 369 FALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITprePWDGKDGELPVEDDIDLS 428
Query: 183 ELGIEE-PKSEL 215
++ +++ K EL
Sbjct: 429 DVELDDLEKDEL 440
>sp|P38660|PDIA6_MESAU Protein disulfide-isomerase A6 precursor (Protein disulfide
isomerase P5)
Length = 439
Score = 75.1 bits (183), Expect = 5e-14
Identities = 35/72 (48%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 YATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDPWVGKDGEMPKEEEIDLS 182
+A L G FS+ GI +F+R++S GR STA + G PAIT +PW G+DGE+P E++IDLS
Sbjct: 368 FALLKGSFSEQGINEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGELPVEDDIDLS 427
Query: 183 ELGIEE-PKSEL 215
++ +++ K EL
Sbjct: 428 DVELDDLEKDEL 439
>sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 precursor (Protein disulfide
isomerase P5) (Thioredoxin domain-containing protein 7)
Length = 440
Score = 73.6 bits (179), Expect = 1e-13
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +3
Query: 3 YATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDPWVGKDGEMPKEEEIDLS 182
+A L G FS+ GI +F+R++S GRGSTA + G P I +PW G+DGE+P E++IDLS
Sbjct: 369 FALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLS 428
Query: 183 ELGIEE 200
++ +++
Sbjct: 429 DVELDD 434
>sp|Q5R6T1|PDIA6_PONPY Protein disulfide-isomerase A6 precursor
Length = 440
Score = 73.6 bits (179), Expect = 1e-13
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +3
Query: 3 YATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDPWVGKDGEMPKEEEIDLS 182
+A L G FS+ GI +F+R++S GRGSTA + G P I +PW G+DGE+P E++IDLS
Sbjct: 369 FALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLS 428
Query: 183 ELGIEE 200
++ +++
Sbjct: 429 DVELDD 434
>sp|Q11067|PDIA6_CAEEL Probable protein disulfide-isomerase A6 precursor
Length = 440
Score = 72.0 bits (175), Expect = 4e-13
Identities = 32/71 (45%), Positives = 50/71 (70%)
Frame = +3
Query: 3 YATLTGPFSQTGIQDFVRDVSLGRGSTAAIVGEGLPAITPVDPWVGKDGEMPKEEEIDLS 182
YA L G F + GI +F+RD+S G+G T+++ G+G P I + W GKDG +P E++IDLS
Sbjct: 372 YAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAEDDIDLS 431
Query: 183 ELGIEEPKSEL 215
++ ++ K+EL
Sbjct: 432 DIDLD--KTEL 440
>sp|O54943|PER2_MOUSE Period circadian protein 2 (mPER2)
Length = 1257
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 217 KKYHLGSLDPLVHAGGLPTGDDVYSCYCC 303
++ L + P VH GGLPT DV C C
Sbjct: 1185 QRRELREVHPWVHTGGLPTAIDVTGCVYC 1213
>sp|Q9Z301|PER2_RAT Period circadian protein 2 (rPER2)
Length = 1257
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 217 KKYHLGSLDPLVHAGGLPTGDDVYSCYCC 303
++ L + P VH GGLPT DV C C
Sbjct: 1185 QRRELREVHPWVHTGGLPTAIDVTGCVYC 1213
>sp|P61826|COAT_PAVC Coat protein VP2
Length = 584
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = -3
Query: 318 YIQRTTTIATVHIITSWQPARMNKRIEATQMIFFTVQISVPRYRVHSDRSLLLWAFLHPC 139
Y Q T+ H TS P + + + F+T++ SVP + + + F C
Sbjct: 211 YFQWDRTLVPSHTGTSGTPTNIYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDC 270
Query: 138 QP 133
+P
Sbjct: 271 KP 272
>sp|Q11213|COAT_PAVCB Coat protein VP1 [Contains: Coat protein VP2]
Length = 727
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = -3
Query: 318 YIQRTTTIATVHIITSWQPARMNKRIEATQMIFFTVQISVPRYRVHSDRSLLLWAFLHPC 139
Y Q T+ H TS P + + + F+T++ SVP + + + F C
Sbjct: 354 YFQWDRTLIPSHTGTSGTPTNIYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDC 413
Query: 138 QP 133
+P
Sbjct: 414 KP 415
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,796,932
Number of Sequences: 369166
Number of extensions: 689766
Number of successful extensions: 2530
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)