Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E24
(767 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9J560|V173_FOWPV Protein FPV173 32 2.5
sp|P25302|SWI4_YEAST Regulatory protein SWI4 (Cell-cycle bo... 32 2.5
sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 31 3.2
>sp|Q9J560|V173_FOWPV Protein FPV173
Length = 76
Score = 31.6 bits (70), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 270 YESIIHCCSNLPPYNIGLNTFSFIVNCVILYCNIDIFCNTL 148
Y SI++ S L + N + +C++ +C I CNTL
Sbjct: 4 YSSILNSISTLAFLQVASNVIELVRHCIMHFCETRIRCNTL 44
>sp|P25302|SWI4_YEAST Regulatory protein SWI4 (Cell-cycle box factor, chain SWI4) (ART1
protein)
Length = 1093
Score = 31.6 bits (70), Expect = 2.5
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 5/152 (3%)
Frame = +2
Query: 38 NISLNILSPNLDPMTYVLFYPYGESGWQPNLYLNSYHNVLQKISMLQYKIT----QLTIK 205
N S+NI++ N + T N ++ HN++ IS + T Q +I
Sbjct: 222 NSSMNIMNNNDNHTTM-------------NFNNDTRHNLINNISNNSNQSTIIQQQKSIH 268
Query: 206 ENVFNPILYGG-KLLQQWIIDSYLQVEANNLNYIRQNQKKLKIEHYKGLVDYINHNNNSD 382
EN FN K LQ + I + LQ + LN N + +++ N+NNN +
Sbjct: 269 ENSFNNNYSATQKPLQFFPIPTNLQNKNVALNNPNNNDSNSYSHNIDNVINSSNNNNNGN 328
Query: 383 IGRPIILPSTF*GSIRNMRERYHDAMAIVGKF 478
II+P G +++ +++ H + F
Sbjct: 329 NNNLIIVPD---GPMQSQQQQQHHHEYLTNNF 357
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
Length = 373
Score = 31.2 bits (69), Expect = 3.2
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Frame = +2
Query: 26 INYDNISLNILSPNLD-PMTYVLFYPYG-----ESGWQPNLYLNS--YHNVLQKISMLQY 181
+N N +NI++ N++ + +L Y Y ES +YLNS + + M +Y
Sbjct: 150 MNMMNKLMNIMNNNMNNSLCNILSYYYNKKVTIESIKLSYIYLNSDIFSKYISLNDMNKY 209
Query: 182 KITQLTIKENVFNPILYGGKLLQQWIIDSYLQVEANNLNYIRQNQKKLKIEHYKGLVDYI 361
LT + + N I+ KL I +Y+ NN+N I N+ Y +++ +
Sbjct: 210 NNGILTNYQRMLNNIM--PKLNDHNISMNYI----NNINNINNNK-------YNNMINLL 256
Query: 362 NHNNNSD 382
N+NNN++
Sbjct: 257 NNNNNNN 263
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,944,510
Number of Sequences: 369166
Number of extensions: 1268293
Number of successful extensions: 3557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3557
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)