Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E20
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6P8G1|ILF2_XENTR Interleukin enhancer-binding factor 2 ... 272 9e-73
sp|Q9CXY6|ILF2_MOUSE Interleukin enhancer-binding factor 2 ... 265 8e-71
sp|Q9VG73|ILF2_DROME Interleukin enhancer-binding factor 2 ... 265 8e-71
sp|Q6NZ06|ILF2_BRARE Interleukin enhancer-binding factor 2 ... 262 9e-70
sp|Q7TP98|ILF2_RAT Interleukin enhancer-binding factor 2 (L... 242 7e-64
sp|Q9Z1X4|ILF3_MOUSE Interleukin enhancer-binding factor 3 65 2e-10
sp|Q9JIL3|ILF3_RAT Interleukin enhancer-binding factor 3 65 2e-10
sp|Q12906|ILF3_HUMAN Interleukin enhancer-binding factor 3 ... 65 3e-10
sp|Q6NXA4|ILF3_BRARE Interleukin enhancer-binding factor 3 ... 62 2e-09
sp|Q9CDW7|RL22_LACLA 50S ribosomal protein L22 33 0.68
>sp|Q6P8G1|ILF2_XENTR Interleukin enhancer-binding factor 2 homolog
Length = 388
Score = 272 bits (695), Expect = 9e-73
Identities = 137/260 (52%), Positives = 176/260 (67%)
Frame = +2
Query: 5 LIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKM 184
LI+ P FE Q EE+R VGSYKKGTM TG N+AD V+I K LPT EA+ A +VE +
Sbjct: 87 LIVAPGNFEV-QIEEVRQVGSYKKGTMSTGHNVADLVVILKILPTLEAVSALGIKVVETL 145
Query: 185 RNSDLANARFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLHLDTKVIQGSLAA 364
R D A LT GFEI + +++IL+ T+P NL+KLD +LHLD KV+Q +LAA
Sbjct: 146 RTQDPAEV--LTMLTNETGFEISSADATVKILITTVPPNLRKLDPELHLDIKVLQSALAA 203
Query: 365 VRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPI 544
+RH RWFE+NA H++ R+ GFE L+PWI+DLL HYA++NNPT L +
Sbjct: 204 IRHARWFEENASHSTVKVLIRLLKDLRSRFPGFEPLTPWILDLLGHYAVMNNPTRQPLAL 263
Query: 545 HQAFKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHG 724
+ ++KR Q+L+AGLFLPGS GI DPCE G R+HT MTLE QD VC TAQTL+R+L HG
Sbjct: 264 NVSYKRCLQMLAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHG 323
Query: 725 GYKEILGYSDRRINFATDMS 784
G+++ILG AT+MS
Sbjct: 324 GFRKILGLEGDASALATEMS 343
>sp|Q9CXY6|ILF2_MOUSE Interleukin enhancer-binding factor 2 (Nuclear factor of activated
T-cells 45 kDa)
sp|Q12905|ILF2_HUMAN Interleukin enhancer-binding factor 2 (Nuclear factor of activated
T-cells 45 kDa)
sp|Q5RFJ1|ILF2_PONPY Interleukin enhancer-binding factor 2
Length = 390
Score = 265 bits (678), Expect = 8e-71
Identities = 133/260 (51%), Positives = 176/260 (67%)
Frame = +2
Query: 5 LIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKM 184
LI+ P FE Q EE+R VGSYKKGTM TG N+AD V+I K LPT EA+ A + +VE +
Sbjct: 88 LIVAPGTFEV-QIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 185 RNSDLANARFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLHLDTKVIQGSLAA 364
R D + LT GFEI + +++IL+ T+P NL+KLD +LHLD KV+Q +LAA
Sbjct: 147 RAQDPSEV--LTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAA 204
Query: 365 VRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPI 544
+RH RWFE+NA ++ R+ GFE L+PWI+DLL HYA++NNPT L +
Sbjct: 205 IRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLAL 264
Query: 545 HQAFKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHG 724
+ A++R Q+L+AGLFLPGS GI DPCE G R+HT MTLE QD VC TAQTL+R+L HG
Sbjct: 265 NVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHG 324
Query: 725 GYKEILGYSDRRINFATDMS 784
G+++ILG A+++S
Sbjct: 325 GFRKILGQEGDASYLASEIS 344
>sp|Q9VG73|ILF2_DROME Interleukin enhancer-binding factor 2 homolog
Length = 396
Score = 265 bits (678), Expect = 8e-71
Identities = 133/251 (52%), Positives = 170/251 (67%), Gaps = 4/251 (1%)
Frame = +2
Query: 5 LIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDY----L 172
L++ P Q EE+R VGS+KKGT+LTG N+AD V+I KTLPTKEA+ A L
Sbjct: 88 LVVAPGDLTTCQLEEVRQVGSFKKGTILTGNNVADVVVILKTLPTKEAVDALAKKVEADL 147
Query: 173 VEKMRNSDLANARFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLHLDTKVIQG 352
M+ L T + GF+I +RIL+AT+P NL+KL+ ++HLD K++Q
Sbjct: 148 KASMKTEVLTKGDQHTVQIHERGFDIANVHAKVRILIATLPQNLRKLEPEIHLDHKLMQS 207
Query: 353 SLAAVRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNN 532
LAA+RH RWFE+NA H+S +R++ F LS W++DL+AH AI+NNP+
Sbjct: 208 HLAAIRHTRWFEENAHHSSIKVLIRILKDLTRRFDAFSPLSAWMLDLIAHLAIMNNPSRQ 267
Query: 533 ALPIHQAFKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRV 712
ALPI+ AF+RVFQLLSAGLFLPGSAGI DP E G +R+HT+MTLE QD C T+QTLLRV
Sbjct: 268 ALPINLAFRRVFQLLSAGLFLPGSAGITDPTEPGHIRVHTAMTLEQQDVCCYTSQTLLRV 327
Query: 713 LCHGGYKEILG 745
L HGGYK ILG
Sbjct: 328 LAHGGYKHILG 338
>sp|Q6NZ06|ILF2_BRARE Interleukin enhancer-binding factor 2 homolog
Length = 387
Score = 262 bits (669), Expect = 9e-70
Identities = 133/261 (50%), Positives = 176/261 (67%), Gaps = 1/261 (0%)
Frame = +2
Query: 5 LIINPAAFEAAQFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKM 184
LI+ P FE Q EE+R VGSYKKGTM G N+AD V+I K LPT EA+ A + +VE +
Sbjct: 88 LIVAPGNFEV-QIEEVRQVGSYKKGTMTAGHNVADLVVILKILPTLEAVAALGNKVVETL 146
Query: 185 RNSDLANA-RFLTSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLHLDTKVIQGSLA 361
R D + LT++ GFEI + +++IL+ T+P NL+KLD +LHLD KV+Q +LA
Sbjct: 147 RTQDPSEVLSMLTNET---GFEISSADATVKILITTVPPNLRKLDPELHLDIKVLQSALA 203
Query: 362 AVRHIRWFEDNAGHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALP 541
A+RH RWFE+NA ++ R+ GFE L+PWI+DLL H A++N+P+ LP
Sbjct: 204 AIRHARWFEENASQSTVKVLIRLLKDIRVRFPGFEPLTPWILDLLGHSAVMNHPSRQPLP 263
Query: 542 IHQAFKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCH 721
++ A++R Q+L+AGLFLPGS GI DPCE G R+HT MTLE QD VC TAQTL+RVL H
Sbjct: 264 LNVAYRRCLQMLAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCFTAQTLVRVLSH 323
Query: 722 GGYKEILGYSDRRINFATDMS 784
GGY++ILG T+MS
Sbjct: 324 GGYRKILGLEGDASYLTTEMS 344
>sp|Q7TP98|ILF2_RAT Interleukin enhancer-binding factor 2 (Liver regeneration-related
protein LRRG031)
Length = 463
Score = 242 bits (618), Expect = 7e-64
Identities = 122/249 (48%), Positives = 159/249 (63%)
Frame = +2
Query: 38 QFEELRLVGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFL 217
Q EE+R VGSYKKGTM TG N+AD V+I K LPT FL
Sbjct: 193 QIEEVRQVGSYKKGTMTTGHNVADLVVILKILPT------------------------FL 228
Query: 218 TSDVRTYGFEIMTPGCSLRILVATMPINLKKLDSQLHLDTKVIQGSLAAVRHIRWFEDNA 397
T GFEI + +++IL+ T+P NL+KLD +LHLD KV+Q +LAA+RH RWFE+NA
Sbjct: 229 TMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEENA 288
Query: 398 GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPIHQAFKRVFQLL 577
++ R+ GFE L+PWI+DLL HYA++NNPT L ++ A++R Q+L
Sbjct: 289 SQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQIL 348
Query: 578 SAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHGGYKEILGYSDR 757
+AGLFLPGS GI DPCE G R+HT MTLE QD VC TAQTL+R+L HGG+++ILG
Sbjct: 349 AAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGD 408
Query: 758 RINFATDMS 784
A+++S
Sbjct: 409 ASYLASEIS 417
>sp|Q9Z1X4|ILF3_MOUSE Interleukin enhancer-binding factor 3
Length = 898
Score = 65.5 bits (158), Expect = 2e-10
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 15/244 (6%)
Frame = +2
Query: 59 VGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFLTS--DVR 232
VG KG +L G + V++ K PT + D L ++ L S D
Sbjct: 95 VGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLTTVTEDKYEILQSVDDAA 154
Query: 233 TYGFEIMTPGCSLRILVATMPINLKKLDSQLH------------LDTKVIQGSLAAVRHI 376
P SL I + T P+ ++++ L LD + +LA++RH
Sbjct: 155 IVIKNTKEPPLSLTIHL-TSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHA 213
Query: 377 RWFEDNA-GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPIHQA 553
+WF+ A G S R + L W ++LL +I N + +A
Sbjct: 214 KWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEA 271
Query: 554 FKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHGGYK 733
+RV + L++G+ +P +GI DPCE+ + + ++++ +AQ LR+ G
Sbjct: 272 LRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLH 331
Query: 734 EILG 745
++LG
Sbjct: 332 KVLG 335
>sp|Q9JIL3|ILF3_RAT Interleukin enhancer-binding factor 3
Length = 897
Score = 65.5 bits (158), Expect = 2e-10
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 15/244 (6%)
Frame = +2
Query: 59 VGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFLTS--DVR 232
VG KG +L G + V++ K PT + D L ++ L S D
Sbjct: 95 VGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLTTVTEDKYEILQSVDDAA 154
Query: 233 TYGFEIMTPGCSLRILVATMPINLKKLDSQLH------------LDTKVIQGSLAAVRHI 376
P SL I + T P+ ++++ L LD + +LA++RH
Sbjct: 155 IVIKNTKEPPLSLTIHL-TSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHA 213
Query: 377 RWFEDNA-GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPIHQA 553
+WF+ A G S R + L W ++LL +I N + +A
Sbjct: 214 KWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEA 271
Query: 554 FKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHGGYK 733
+RV + L++G+ +P +GI DPCE+ + + ++++ +AQ LR+ G
Sbjct: 272 LRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLH 331
Query: 734 EILG 745
++LG
Sbjct: 332 KVLG 335
>sp|Q12906|ILF3_HUMAN Interleukin enhancer-binding factor 3 (Nuclear factor of activated
T-cells 90 kDa) (NF-AT-90) (Double-stranded RNA-binding
protein 76) (DRBP76) (Translational control protein 80)
(TCP80) (Nuclear factor associated with dsRNA) (NFAR)
(M-phase phosphoprotein 4) (MPP4)
Length = 894
Score = 64.7 bits (156), Expect = 3e-10
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 15/244 (6%)
Frame = +2
Query: 59 VGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFLTS--DVR 232
VG KG +L G + V++ K PT + D L ++ L S D
Sbjct: 95 VGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLAAVTEDKYEILQSVDDAA 154
Query: 233 TYGFEIMTPGCSLRILVATMPINLKKLDSQLH------------LDTKVIQGSLAAVRHI 376
P SL I + T P+ ++++ L LD + +LA++RH
Sbjct: 155 IVIKNTKEPPLSLTIHL-TSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHA 213
Query: 377 RWFEDNA-GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPIHQA 553
+WF+ A G S R + L W ++LL +I N + +A
Sbjct: 214 KWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI--GTANRPMGAGEA 271
Query: 554 FKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHGGYK 733
+RV + L++G+ +P +GI DPCE+ + + ++++ +AQ LR+ G
Sbjct: 272 LRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLH 331
Query: 734 EILG 745
++LG
Sbjct: 332 KVLG 335
>sp|Q6NXA4|ILF3_BRARE Interleukin enhancer-binding factor 3 homolog
Length = 833
Score = 62.0 bits (149), Expect = 2e-09
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 16/245 (6%)
Frame = +2
Query: 59 VGSYKKGTMLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANARFLTSDVRTY 238
VG KG +L G + V++ K PT ++ D L +++ + +R
Sbjct: 96 VGLVAKGLLLKGDLDLELVLLCKEKPTITLLKKVSDNLAVQLKQLVTEEKYDVKPCIRDA 155
Query: 239 GFEIMT---PGCSLRILVATMPINLKKLDSQLH------------LDTKVIQGSLAAVRH 373
I P +L I + T P+ ++++ Q LD + +LA++RH
Sbjct: 156 TIVIKNAKEPPLTLTIHL-TSPLVREEVEKQAAGETLSVIDPPDVLDRQKCLTALASLRH 214
Query: 374 IRWFEDNA-GHTSXXXXXXXXXXXXQRYEGFEALSPWIIDLLAHYAILNNPTNNALPIHQ 550
+WF+ A G S R + L W ++LL AI N + +
Sbjct: 215 AKWFQARANGLRSCVIVIRILRDLCARVPTWSPLRGWPLELLCEKAI--GTGNRPMGAGE 272
Query: 551 AFKRVFQLLSAGLFLPGSAGIIDPCEQGRVRLHTSMTLEHQDEVCCTAQTLLRVLCHGGY 730
A +RV + L++G+ + +GI DPCE+ + + + ++++ +AQ LR+ G
Sbjct: 273 ALRRVLECLASGILMADGSGICDPCEKELTDAISHVDRQQREDITQSAQHALRLSAFGQL 332
Query: 731 KEILG 745
++LG
Sbjct: 333 HKVLG 337
>sp|Q9CDW7|RL22_LACLA 50S ribosomal protein L22
Length = 115
Score = 33.5 bits (75), Expect = 0.68
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 83 MLTGQNIADAVIIFKTLPTKEAIQAFKDYLVEKMRNSDLANA 208
++ G+ +ADA+ I K PTK A++ VE + NS +ANA
Sbjct: 27 LIRGKRVADAIAILKFTPTKAAVE------VENVLNSAIANA 62
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,945,096
Number of Sequences: 369166
Number of extensions: 1606474
Number of successful extensions: 3405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)