Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E13
(412 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P84045|H4_TIGCA Histone H4 >gi|50402135|sp|P84050|H4_RHY... 148 4e-36
sp|P62806|H4_MOUSE Histone H4 >gi|51317337|sp|P62801|H4_CHI... 148 4e-36
sp|Q6WV74|H4_MYTCH Histone H4 148 4e-36
sp|Q6LAF1|H4_DENKL Histone H4 >gi|462242|sp|P35059|H4_ACRFO... 148 5e-36
sp|Q27765|H4_STYPL Histone H4 147 8e-36
sp|P82888|H4_OLILU Histone H4 147 8e-36
sp|Q76H85|H4_SILLA Histone H4 >gi|51317313|sp|P62788|H4_PEA... 147 1e-35
sp|P62786|H42_WHEAT Histone H4 variant TH091 147 1e-35
sp|P62779|H4_PYCHE Histone H4 >gi|51317318|sp|P62778|H4_PIS... 146 2e-35
sp|Q9U7D0|H4_MASBA Histone H4 146 2e-35
>sp|P84045|H4_TIGCA Histone H4
sp|P84050|H4_RHYAM Histone H4
sp|P84049|H4_MYRRU Histone H4
sp|P84044|H4_DROYA Histone H4
sp|Q76FF5|H4_DROTE Histone H4
sp|P84043|H4_DROSI Histone H4
sp|Q76FD9|H4_DROSE Histone H4
sp|Q76FF1|H4_DROOR Histone H4
sp|Q76FE7|H4_DROMA Histone H4
sp|P84041|H4_DROER Histone H4
sp|P84046|H4_CHITH Histone H4
sp|P84047|H4_ASEAQ Histone H4
sp|P84048|H4_ACRAS Histone H4
sp|P84040|H4_DROME Histone H4
sp|P84042|H4_DROHY Histone H4
Length = 103
Score = 148 bits (374), Expect = 4e-36
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTYTEHAKRKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|P62806|H4_MOUSE Histone H4
sp|P62801|H4_CHICK Histone H4
sp|P62798|H4_XENBO Histone H4
sp|P62794|H4_URECA Histone H4
sp|P62804|H4_RAT Histone H4
sp|P62795|H4_PLADU Histone H4
sp|P62796|H4_ORENI Histone H4
sp|P62797|H4_ONCMY Histone H4
sp|Q6WV72|H4_MYTTR Histone H4
sp|Q6WV90|H4_MYTGA Histone H4
sp|Q7K8C0|H4_MYTED Histone H4
sp|Q6WV73|H4_MYTCA Histone H4
sp|Q7KQD1|H4_CHAVR Histone H4
sp|P62800|H4_CAIMO Histone H4
sp|P62803|H4_BOVIN Histone H4 (H4.1)
sp|P62799|H4_XENLA Histone H4
sp|P62802|H4_PIG Histone H4
sp|P62805|H4_HUMAN Histone H4
Length = 103
Score = 148 bits (374), Expect = 4e-36
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTYTEHAKRKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|Q6WV74|H4_MYTCH Histone H4
Length = 103
Score = 148 bits (374), Expect = 4e-36
Identities = 75/76 (98%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTYTEHAKRKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|Q6LAF1|H4_DENKL Histone H4
sp|P35059|H4_ACRFO Histone H4
Length = 103
Score = 148 bits (373), Expect = 5e-36
Identities = 74/76 (97%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|Q27765|H4_STYPL Histone H4
Length = 103
Score = 147 bits (371), Expect = 8e-36
Identities = 74/76 (97%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTYTEHAKRKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTA+DVVYALKRQGRT
Sbjct: 82 VTALDVVYALKRQGRT 97
>sp|P82888|H4_OLILU Histone H4
Length = 102
Score = 147 bits (371), Expect = 8e-36
Identities = 74/76 (97%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTYTEHA+RKT
Sbjct: 21 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKT 80
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 81 VTAMDVVYALKRQGRT 96
>sp|Q76H85|H4_SILLA Histone H4
sp|P62788|H4_PEA Histone H4
sp|P62787|H4_MAIZE Histone H4
sp|Q6LAF3|H4_FLATR Histone H4
sp|Q6WZ83|H4_EUCGL Histone H4
sp|Q6PMI5|H4_CHEMJ Histone H4
sp|P62785|H41_WHEAT Histone H4 variant TH011
sp|P59259|H4_ARATH Histone H4
sp|P62887|H4_LOLTE Histone H4
Length = 103
Score = 147 bits (370), Expect = 1e-35
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLEN+IRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|P62786|H42_WHEAT Histone H4 variant TH091
Length = 103
Score = 147 bits (370), Expect = 1e-35
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLEN+IRDAVTYTEHA+RKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|P62779|H4_PYCHE Histone H4
sp|P62778|H4_PISOC Histone H4
sp|P62777|H4_PISBR Histone H4
sp|P62780|H4_PARLI Histone H4
sp|P62782|H4_LYTPI Histone H4
sp|P62776|H4_HOLTU Histone H4
sp|P62784|H4_CAEEL Histone H4
sp|P62783|H4_STRPU Histone H4
sp|P62781|H4_PSAMI Histone H4
Length = 103
Score = 146 bits (368), Expect = 2e-35
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRDAVTY EHAKRKT
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKT 81
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 82 VTAMDVVYALKRQGRT 97
>sp|Q9U7D0|H4_MASBA Histone H4
Length = 108
Score = 146 bits (368), Expect = 2e-35
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 99 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDAVTYTEHAKRKT 278
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN+IRD+VTYTEHA+RKT
Sbjct: 27 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKT 86
Query: 279 VTAMDVVYALKRQGRT 326
VTAMDVVYALKRQGRT
Sbjct: 87 VTAMDVVYALKRQGRT 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,180,196
Number of Sequences: 369166
Number of extensions: 633958
Number of successful extensions: 1520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)